| Basic information from miRBase |
| hairpin accession number: MI0002255 |
| Located between position 5476416 and 5476581 on chromosome scaffold_8 strand + |
| mature miRNAs for MI0002255: |
| ptc-miR169e (MIMAT0001961): CAGCCAAGGATGACTTGCCGG |
| References |
| [1]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" |
>promoter (3kb upstream pre-miRNA, by PMRD):
GGGATTTGAAGCGCATGGAGGAATCACTGGAGACTTTGACCAAGGTAGTCTCTGAACTTACTAAGCAACAATTTCAGCTC
TTGAAACAACAGAGTTCTTTGAATTCTACATATGATGGTATTGCTAATAGGTATAATCAAGAGTTTTCTGATATCAGGGA
ATTGATTGAAGGAATTAATTTGCAACATATTGAGACAATGCGGGTTAGACAATATGGAGTTAATAGACGTGCTCATGGAG
ATGTTAATGGGGTGCTTATTGTTTTACAATGGCCTGAGTATGTTGAGGCTTTAATGGCTAATTTTAGAAAGATGGTTGCA
AGTGATCCTATGGCTGGGCTCATTTATCCAAAACAGAAAGGAGATGTTAGTTCTTTATTTCGCAAATTTATTTCTGTAGT
GAATCGTCTTTCTGCGCCCGAGGAATATGTAATGTTGATTCTTAGGCAACATGGAGCCTGAGCCCTGAGTTACAGATACC
AGCTAGAATGTTCAATCCAAAAACTTTTTAAGCCTTTCTCTAGCCAAACTTTAAGAACTTACCCCCAACCTTCTTCCTAA
ATCATTGACCAAATCAAACCATTTCTCCATGACCAAAACTAATTCATTCTTTCCAAACAAAACCAATTTGAACATTTCTA
GACCTGTACCCACCAATAACCAATTTAAACTTCCTAGTCCTGTTGCCGATAACAACCAAAAAGGATCTATTTCCTTTACC
ACCACAATTCCAAAAGGGTAATTAGGTTTTCAGAACTAGAAGGGTACCTAGTCCTAGAGAAAATGCGAAAGGGAAAATGC
TGCTATTGTGAGGAAAAATATACCCTGATCATCTTCACCGGTGTAAAGGGAGACAGTTGTTCTTGTTAGAAGTTGATGAA
TTAAAGTATGGTGAATCAGAAGTGATCTTGTCGACCAGTCAGTAGGACAGCGGGGAAATGAATGTTGGAAGTGGTGATTT
GTACCGATTTCTGTCAATGCCATGTTTGGAGATGGCTCATATAGGACCATGAAGGTTTTGGGAACTGGTGGCTCTGAAAA
ATATTTGTGTTAAGGTGGCTAGTGGTGCTAAGGTTATGTGCACCCAAATGTGGAAGAACTTCAAATGTAAAATGCAAGGA
AAATGGTTTCACATTGATGTGTATATTCTGACCTTGGGATCTTATGATGTCATTTGGGATGCTCAATGGTTGTATGAACT
AGGTAACATTGTGTGGAATGTCAAAGAGTTATGGACGAAATTTGTGCTTAATGGTGAGAAATTTTAAGCTAAGACGAAAT
TTGTCTTGCATTTTGTATAGCCACTACCTTTGTATTTCTTCTACCAACAGATTCTTCCCTCAGAAAAAATAATTCTCGTA
ACGTTCATTGATTTCATGCAAAGTGTTTTCAACTTAATAAAAGAACGATTCTGATTTGTTGATATCAAGCTTTTATTTTC
AGTTTTGATTTCTATAACCAAAGCTTGCAATTCTTCTCTTCAGTTACCGGAAACTTTCACTCCCCATCCTTTTCTTTTAA
AATAAAAGGAACTGCCATTACAATTTTGGTTGAATTTCTTGGATGGAGTGATTTTATCCCTGCAACAGCTGAAACTTGAA
AGAAAGGGAGTGTTGCACGGCTGGACGCTTGGACCTCAAGAGGAGGCAAGAAGAGGGGGAGTGCTGCGCTGATTTCTCTG
CTCAAGATGGGAAAGGGAAACCATTCTGCCGAAGCTGGTACAAAAAAGAATCCTAAGCTCATGTCATCCTATAACTAATT
AACCAGAGTCCTTGTTCACGAGATCAGTGCTGCCCTGTCAGGCTGTCTTTCCCTTGTTCCATTAACGTCACGCACTCACA
CTTCTGTCTGAGTACCTAGTACTGAAGTCCATGTCTTTCCCTTCTTCGTCCTATCCTTCTCCCATCCATTTCTATCTTAC
AAAATGGGCATTAGTAACATGATGATTTTCTTAAGATTGAATCACATATTCATATAACACAAAACCATAAAATGAACTCT
TACCATAGAAACAGGGGGGATTGTAGGGCAAACGTCTGCATCTTTTCCTCCCCTGAACACTCTTGATATAGCAATAACAA
TAACAATAAAAAAAAAATGTAAAATATTGAAACAATTTGTTTGCTAGCCATGATCACTTACGATATACAAGTTCCCATGA
CCATATGACAACTCTTGACTTGTATGCGTGAATAACACAAATAGAAATGACCTGCGGTGTTGGTTTCTTTTAGGGTTGGT
GTAAGAACTATGAATGGTAATTGCTAAACATATGGGAATTCACCCCTCCAAAACAGCGACCTCCATGTGCAAGCCAAGCA
TTGCCTTCAAAAACTTTCTTGAATAGTGTGAACAAGCCACCGAAATTGGTGAGTGAATCAGTTTCACTTCCTTATCCGAG
CTTTGAAGCTGGCCAGTGATAAGGTTTTTGTTTTTCAAAACAATTTGAAAGCAGTAAAATCTCGTAGGTAGATATTGCTT
TCTTCTCTAAGATCATCACATCACGTGGTACATAAAATGAAAAATCACCAACACTAGGATACTTTAACCTTATCATGTGA
TCATGGAGTAGATATGTCTATATCTCTGATCTTTAATTATCATCTCTTATCCTGTGACACCAGTACCCTTGAAAACCATC
AATTCAACTCCTGACGTCTCTCGCATCCCGTTGGTTGATAGAAATAATATATGGGTATGAAGTTTGAGCTCCTCCATGCA
ATGATTGAATCAAAGAGTCCGATGCCTCAATGCAACACAATCATGTCATCTTAAAAACCAAAGCATTACTCATACTCTTT
CTCCAACTTAATCAATACAAGTGACGTGCTTGTGATACGATATCACTCAAATATATATATATATATATATATATATATAT
ATATATATATATATATATAGCTCTCTCCTCTGGTGCCATGGTCAGAGTTGCAATAATTCTTCGTTGACAGAAGAACTAGA
TTTATTAATTCATCTAGGGTCTTAACATGTGAAGATGAGA