miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0001070
Located between position 5020237 and 5020486 on chromosome 4 strand -
mature miRNAs for MI0001070:
         ath-miR401 (MIMAT0001002): CGAAACTGGTGTCGACCGACA

References
[1]Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"




>promoter (3kb upstream pre-miRNA, by PMRD):
GAGCTGGTGGCTGATTATGATCTGGAGATAGTCACATTTCCACCAACATACTCGATCACTAGTAGCAGAGAGGGAAGCAG
TCAGCTCAGCAGTCCACCTAGACACTTATACTCGATCGCAGAGGAGAGGAGGCAGTCCCAAATGCAGTTCTACTCGATCA
CAGAGCTAGAGGAGTCCATCCTGACTATTCTACTCGATCGCAGAGGCGACCAGGCAGTCCACTTTGCCTGTCCACCAGTT
CTACTCGATCGCGGAGGAGAAGAACCAGTCCATCTTGACAGCTGACACACATACTCGATCACAGAGGCCAAGAAGCAGCC
TAGACCATTCTATGTTATTGTCTTTAAGCATGTTGTCTGAGTAGTGATTAGGATTTCTGAGGATGGGATAGAGTAGTTGT
GGAACCCCTGGTCGAATATGTTGGTTAAGTGTAGAGTTATTGAATCCCTTTTGGATTAGTTGTGTTTACTGCTTATTCCT
TTCTGATCAACTGGAATCCGATCCCAGACGTTCCAGCGCTCAAAAGGCGTTTAATGGAACGTTGGATCTACTAATTCTAG
TGATAATCGTCTCTATCCCAAGTGATTGAACGTTTAGAGCGGTTATTGGCTTTAACAGTCGGTTCTTATTGCCTGCTTAG
TTAGAGATCGCTCTTGGGAATTAGGTCAGTGTCTAGCTATGCTTGAGGATTTCTATCACGGGAGTGAATTAATCTGTTGT
TGAACCTGTTGTCTAGGGATAGCTTAATTGAGATTTGTTAACCAACTGAATTGATTAGGGAGACCACACTATTCGATTAC
CCCATCCTTAGGAGTTTCTCATCCATTTGATTCCTCTGTTTACTTACCTGCTTCATTCACTTGCTATTGAATTTTAGTAT
TTTTCTGTTTTCAACCATTCTACTCGATCACACCCTGCTACTAACAGTGAGAATGTGTGATAGAGTAAACTGGTCCATTT
CTACATTTTCACTATCTGTCATCCTGTTGTACTCGATCACAGGGTCTCTTCTGGCAGTCGACCCGACGATCAAGTATATC
AGTCATTTCTGTGACTTTTTACTGTTTTCTGCATCAACATTAGGACTGTTAGAAAACCAACCAAATTCTGCTTGGCTTGA
CTTCACAACTTCTGATTATATCTCATCTGTCTGCATCACACCCATTTGGATTGACACCTAAAATATTACAACGATAGGAT
TAGTGTTTTAGGATAATTGATCTTAAAAACCTATTATCAATTTGGCGCCGTTGCCAATTGGGTGTTTTCTTTGCTATATT
TGAGATTTTCGGAAACGTTAAGATCAAGTTCTTTTGTTAAGAGGTTACTGACTCCATGTCTTTTTCTCTGTTTGTGTGTT
TCAGGTGCTCACATTCACCAGCTTCCCTGGACCAGTCTCTGATTGGTCTGTTCAAGCTGTGCTGATATCTATTGTATGCA
AACACGGTCTCAAGGACATCAGAACCTCCTCTTCAAAGACAACATCGACTGCATAGCTCGCTCTCTAAGAGAACAGACAC
ATACAAACACGATGGCTGACGTTGTAGATGAGCAAGAACTGCCCAACAACATTGGCGTTGGTGACTTCCCACACAACCAT
AACTTGCGTCATGGCATTGTCCCTCCACCGGTTCAGACAACAATTTTGAGATCAAGAGCGGTCTCATTGCTATGGTTCAG
GGGAACAAATTTCACGGCCTGCCAATGGAAGACCCACTCGATCACCTGGACGAGTTTGAAATGCTTTGCAGCCTAACAAA
AATTAATGGAGTTAGTGAAGATGGTTTCAAGCTTCGCCTGTTCCCGTTTTCACTTGGAGACAAAGCCCATCTGTGGGAGA
AGACGCTACCCCAGGGATCAGTCACAACCTGGGACGACTGCAAGAAAGCCTTCCTGGCTAAATTTTTCTCCAACTCCAGA
ACCGCTAGACTCCGGAATGAGATATCTGGATTCACACAGTAGAATGCTGAAACCTTCTGTAAAGCATGGGAGCGCTTCAA
ACGCTATCAGACCAAATTGCCCTCATCACGGGTTCAAAAAAGCTTCACTTCTCAGCAGTCTCTACAGAGGTGTTCTTCAT
AAGATTAGGATGCTTCTTGATACCGCTTCCAACGGGAACTTCCTCAACAAAGATGATATGGTTCAAATTACCTAGAACTA
CTCTCTCAAATAAGAGATCAATTATAGTATTTTAGGATCGAATTCACGGAGTTCTTTTGTTCAAACAATGAGTTAAATGT
TGAGATTAAGCTAGCAGAGTAATAGTGAGAATAAAAGAGAACAAAGTAAAAAGACAGGAGATTGATTTGGTTGTAAACGA
TTTTAATAAAGAGCTAGGAATAGGGTATTCTCAGGAAACTATTGGTTAGTAGATCTAATGAAAGCTAGATTGTTATTGAA
CCATTCTTAAACTCAAACTCTAATTATGGAATAACCGGTGGGCGTGCCGCGAAACTCCCTATATCTATAGCCAATAATAA
CTGGAGAAGCCGAGAAACTATCAACCTAAATATGCATTCTTAACGAGTTCAATTGTTCATCTTAGTAGATAGGCCGATTC
TTATTACACATCTATAAACCAGACTCATCAAATAATAGATCCAACTACAGATACCTATGGCGGGCATATCTATTGTCTGG
ATTCAAGATCTAGTTAATTACTCTAGATCTAGCATTAGGAACAATTAAAGATGAAGAATTCTATAGATAACCTAGCAAAG
GGGGCAATCTACTAAACCATACGAATCCCTAATGAGAAACCCTATTCCTAACAAAGCAGACTACTTAGACATATTGAATG
AAACAAACAACATATTTTGAGATAAAAAGCATAAACATAGTAAATAGAGAAGGGGAAAGAAGGGATCTCTTCACTGTTTA
TAGATCTGAATGAAACTCTCAAGAATAATCGATGAATAGCTTATGTCTCTCACAATAGGGTTTTGCAAAGAACTTTATAA
AAGACTTGATAAAAGAAACTTAGGTCTAAAAAATATATAT