miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0001428
Located between position 13708748 and 13708864 on chromosome 2 strand -
mature miRNAs for MI0001428:
         ath-miR417 (MIMAT0001325): GAAGGTAGTGAATTTGTTCGA

References
[1]Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
[2]Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"




>promoter (3kb upstream pre-miRNA, by PMRD):
GGAGAGAAACGATTTTAGATGAAAAGAGAAACGTTGTGATGATTAGATTAATAGCAAAGACAATAATCAATGAAAGCGAG
ACAGAGGGATAAACAAATCGAAAGAGTTTTTTTTTTTTTTTTTTGGTTAAGAAAACAAATGTTTTTGTTTTGGTCAACGG
CTTATGCAAGTTAATTGACTTTAACAATTCTTTTGTCTTATCAAAGCAAATCTCTTAAATCTTAATATAGTACTAGATTT
TGTTCATGTAAAGTTGAAAAATCATCCAAAAATGGAAGACAATTACATAAGATTTCGTATTTGACAATAGTAGAACATTA
TTAATTTATTATAATCATTTTCACTTAATTTGTTTACGTTTGTTAATTTGATAAAAAGCTAAAATATTTCACATATAAAG
TAAGAAAGGTACAAAAGAAAAATAGTTTGAATTCGGTTTTTCCTAATAGGTTCATGATGAATATTTTATTGTCTAGATTT
ATCGAGTTGTTCGTAGTTTTGATAATAAACTTCTTGTGCGTCGGGGTTAGGCCGAGTTGATTTTTCTAAAAAGAAAGACA
TGTTTAAAAAAAAAAACTAAAATTCTTAAGTGAAGTACCATTTGAAAATTTCTACGTGAAGGGAAAAAAAAGATAAGTTA
ATGCAAACACCATGACGTTAAGAAAAAAAAGTCAATGCCAACACCATTTTGTTTTGGTCGACGGATTAGATAATGCATAT
TGTGCAGACGTATTACTTCTTTGTTGTTACGGTACCAATGACTCGATAGTGGTCAACCAGATTGGTGAAAAAGCCCGACC
GAACATAAACGAGACTGATTTTGTCCTACATGGGCTTCCTCTCAGCCCTTCACGTCATTCGGTTTCTCTACTTGAGATCA
ACTTTTTCTAAAAATAAGTTGAAATCGTGGAAGAGCAGAGCCGAAGCCGCAAAGCCCTAGGATTTATCATTGGAGGATCG
TCTTGCATGCCTATGCAATATGCGACCAAGGACCTCACTTAATGGTGGAGAAATAGGCGACGACATGGGAAAGCTCCACA
CACAGTTTCTTGGATCATCGAGTGGATTAACAAACAAATCCGAAACCGTTTTCCACAATCCGACTTCTAGGCGATAAACG
CTATGATAACGGATTACAAGTTTGGTTTGAAACAAGGATCTAAGTGTAAAAGTTTCTAATTTTCTGCTAAAATTTTCTAC
TATTCGATGCACTAGTTGTACAAACGCTATGTTTTTCTTTAAATATAATTTAATATTATTTTCAAAAAAAAAAAAAATTT
ATAGCGAGATGTTATCAAAGCTATGGGCTTCCATACTTGGCCATCCCTATTTTACCGTGATGTTCTTGACCAGATCTTTG
GCTCGCCCACAGCTCTTGTTTGCCTGCAAAAACAACGATGAAGTATTTTTCTTCTCCTCACCTCAGCCTCATAATCCGGA
TGAGAAGTCGTCTCATGTAGCCGCCACTAGTCACATGAAAATTCCGTATGACTTTGTATTTGAAAGATTCAGTCCTATCA
GAGGTCTGGTCTTTCTTAGAAATCATAAGATATCTTAAATGGAAAGAAGCAGAAGTTGTCGGTGATATGTAATCAGAGGT
CTGGTCTTTCTTAGAAATCAGAGGATCTTATATCGACCACTGTCCATGGAATTGATTATTTATCAAGGCACGATGAGTTG
TCTCAGGAGCATACATTTTTCATTAGTAACTGGAGAACCTTCATGGACACTGATCGAATGTTGCATACCCCACTATCCTA
GTATCACATAGATATTTATTGGTTATATGATAATTCATTCTTCTATTTTCCGTGAAACTACAAAACAAGGAATAAAAACG
TGACTAAACAAAAATACAAAAAAAAAAAAAAAAAAATTGGGCAAGAAAATTATGGCCACGTTTTGTTGATAGCATACGAA
CGCGCCAGAAAATTAGCAAATTTAATTAATTTCACTGAAAAAATTATTTTTGTGTGTGTATGATCATAATGATTCCAGTA
AATGATTTTTGTAGTTCCGTCAAGTGCAAGGTACCATGACAAGCGTATTAGGAATGATGAACCCTAATCTGATCAACGGA
AGAAATCTCCACAAAGGATCTTCAATTTTTGTACAAGATAAAGAAACTAAAAAACGAGTCCAATGGAGATTATCAATCAA
GGAGGGATCTCTAAGAACGCATCAAGCCACTGCTTCTTCTGCAACAGAACCAAAGGTTAGTAGTAACAACAATCTTTGAG
CTTTTTTTTCTGTTAACTCTCTGGTTTTGTGTTTTTGAATCATTAATCTTGAAAACACAGGCGACAGAGTTCAATACGAC
GACGTATGAAGACAAAATGTTGACCAACTATGTTCCTGTCTACGTCATGCTTCAGCTTGGAGTCATCACGAACGATAACG
TTCTTGAAAACGAAGAGAGTCTCAAGAAACAGCTCAAGAAACTGAAACAAAGTCAAGTAGATGGAGTGATGGTTGACGTA
TGGTGGGGAATCGTTGAATCAAAAGGTCCAAAGCAATATCAATGGAGTGCTTATAGAAACTTGTTTGCGATCGTACAAAG
CTTTGGACTAAAGTTACAAGCTATAATGTCGTTTCATAGATGTGGAGGCAACATAGGAGACGATGTCAACATCCCGATAC
CGAAATGGGTACTCGAAATCGGGGATTCGAATCCGGATATCTTCTATACGAACAAGAGTGGTAATAGAAACAAAGAGTGT
TTGTCTCTCTCTGTAGATAACTTGTCTCTCTTCAGAGGACGAACAGCTGTTGAGGTATGAAAAACTCTTGATCTTAGAAC
GTAACTCGGAAAAAATTGCGTTTATATATTGATATAATCGTTGCTCTGTTTCTAGATGTATAGAGACTACATGAAGAGCT
TTAGAGAGAACATGGAAGATTTCATAAGCTCTGGAGTTATAATAGACATTGAAGTAGGGCTTGGTCCTGCTGGAGAGCTT
AGATATCCTTCTTACAGTGAGACTCAAGGATGGGTTTTTC