| Basic information from miRBase |
| hairpin accession number: MI0002286 |
| mature miRNAs for MI0002286: |
| ptc-miR171j (MIMAT0001992): GGATTGAGCCGCGCCAATACT |
| References |
| [1]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" |
>promoter (3kb upstream pre-miRNA, by PMRD):
CATGCCATGGTTGTTATGCCATATGCGCTACTAATGGAAATATTAGTAATAAATAGTGTCATTGCCGCAAAAGATGATAC
TTGTTCTATATAGAAAAAATTATATGCCAAAAAAGATTCATTTGCTTAGAAAGTTTATGTGGAAACCCAAAATTATGCAT
ATAGGGGCATTCCAAGTGCTGAGTGTTGAGTGGTGTCATCAGGCTAAAATTCCAGGAATTTCCGGTCATTTAGGCAAGGC
TCAAACAACTAGAAATAATGTTTTTTCTTGGTATCATCAGAACCTAATTATTTATATTTGACATTAATAACATACTTTTA
AATAATTTTATAAGCAAAAAACATGAAATAGTTTCCTATAATCCTTCATTAAAGAGAACAATCATAAATGACAACACTTT
CATTGGAAGACATCAATGGAGGGTCATGTATGAAATAATTCTTATTTTGTTTTGTTTTCTTTTCTTTACTAAAAACCAAA
TCTCATCCTAATTTATTTGTAAAAAAAACTAAAACACTGCATCTTTGTCATACATTTTGTAAAATCAAGTTAACACAACT
AAATCACTAAAAGAAAATGACAAAAAAAAGTAATTCATTCAACCTAATTTGTCAAATACAAAAACACATGTAAAGTGATA
AATAAAGAAGTACAGTGAAATAAGAATCAATGGATCAAAACATAAATAAGCATTAATGTGATACAAATGTGCTTATAATA
ATCTATTGGACACCATCTTATCCATCAATTCAAGTTCATCGATGAGAAAAAGATCATGAAAACAAATTGTAAGGAATGAG
GATAAAATCATCAAATCTGGTTAATGAACTCTGTCAACTATGCAAAAGTTGTGAAGAGCCTAAATAGAAGCTCAACAAAT
TGTAATTCATAATGGTTAAATGAAATAAAATAATAAAGAATGGTAAATGAAATCTTTATTTGACAAAAAAAAATACCATC
AATAACTCTCATGGGATGAAATGAAATGATGAAATAAATTCATAGAGGCTTAAAACAACAATTGAATATACAAAAAAAAG
AAAAGGATCACTCAATAAAAAAAGAAAAGAAAATAAAAGAAAATATAAAAATAAAGTAATGCATCTAGAAGAGGAAACAC
AAACTAAATAAAAATATAAATACACCAATGGCTTAATGATACAAAAATGGGAAAAATGATGAGAAAGGAACAGAATGAGA
AAAATATCAAAATGAGCCAGCAACAAATCTTCTTCCTTCCTCTTCACGAGACAAGCACCAATCTTTTTACCAATAGTATT
CTCCACTTACTACAAGGCTTTTTATCATTGCTCCACTCGTGGTAAGTTGCAACTCTACATACCATGAGGTACATGTAACA
TTATGCTCCACGAGGTAAGTGTGATCAAGGTCTATAAATATATATGGTTACCACGTAAAATATTCAAGTCAAGCTAAGAC
AATCCAGGCCAAACCATATAATTTCATATAATATCAACAACAACAAGCAACCATACAATAATTTTAGCAACTACAAGCAA
CCATACAACATTTCTTGAAACCATAAATAAACCATTCAATAATCCAAAAAGTTTGGACAAAACACAAAACTTTCATATAT
ACACTCTCCTTCATTCTTTACTCTCCTGCATATTGTTTCGTTCCTATATGTTTTCTAACTTAAACATTGGAGGGTCCCTT
GTTTCGATAAGAAACTTGTTTTACAAAAAAGCTCGAGACAGTCACCCTGTCAACCCACCAGAATTACAAGTCACTCTACC
AACCTAGGATCATAGTGTGCGGAAATCCCAATTCAGTTTGAAGTTTTCACAACTTCATTAGATATACATCAAAGAAGAAA
GAAAATAAGTATAAAAAAAAAACCAACAAGAACAACACTTGATAGTTATAAGAAATGTGAAATGATTGGAAAGAAATCTA
AAATCTAGAAGAAGAAGATGAAAAATCAAGAACAAACTTAAAAAAAAAAAGAATTTTTTTTGAGAATGAAGATAAATAAA
ACATAAAAAACTATAAACATAAATAATATATCAAAGTGCATGGATAATAGAACCTAAGACAAAGAGGCACGAGAGCATAA
TTGAATATCTTGAAAATCATCAAGAAATAAAATCCAACAATATACTATATTCATTAGCCTAATTCAACTACTTATTTTCT
CTATATACATGTAATCTTATGTAATGATGTTAATAAATGCAACCATTAAATTACTATCAACTATACAATAATTAGTATTA
AGCGGCATAAAAAAAAGGAATTAATAACTAATTAATTAGCCAAGAAATCATACATGAGATGGGGAGAGGAGAGATGTTGA
CACCATATTTGTGAGGGGGTTGTAGGAGAAAAAGAAAAGGAAATGACAAGAGGAGCGAATGATTTGGTTTTGAGTTTTAA
TTTCTTTTAAAATTACTGATAGAAATCTCATTAACACAAGTCAACTATGCCAATATAATATTTTTATTTTTTATTCTGTT
GCTATATTCATCAGAAATGACTAAGTGAAATTTTTCATCATAAATTCCATTGATAAACAACAATAAAATATTTTTCATCG
ATGTTTTTATTGTTTTTTTTTAATTTTCTAATAGTGATCAACCTGACTTGTTGAATAAACTCGTATATTCAATGAATAAG
ATTTTGAAAAAAATGAGAGTAGCTTTTTATCGAACATAGAAGAAACTTGCTAAGATTCAATTGACAAGAATATAATATTA
CCTCTCTTTAAAATTAATGAGGATATATGCATACACCACTACCACTTAATGCTTTATTTTCTTTTATCTTAACGAGAAAT
GTCAGTGTTGGCTGTTTGAATGTTTTAGTCCAGCCAACTAATTTCTAAAGAAAAAGGCCGGCATATAAAGCTATAGACCA
GCGGCTTATGTTCTTGGAAAAGTCTCCATGTGCTTCCCCTTAAATTAACCATCAACTACCAATAATTATGCAAAAACCCT
ATAAATATTGGTTGATTTCAGAGTTAGAATCACTTCCAAA