miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0001427
Located between position 7008520 and 7008599 on chromosome 2 strand +
mature miRNAs for MI0001427:
         ath-miR416 (MIMAT0001324): GGTTCGTACGTACACTGTTCA

References
[1]Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
[2]Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"




>promoter (3kb upstream pre-miRNA, by PMRD):
TTGTCCCATGATCACCGGATGGAGTATACGCGCTTTTGTGGTCAGGGTGTTTCAAAAATGCGTGGGAATAAATGAGTTCG
ACCTGGGTCTCATCTTGGCAGATAATCGAGTAATATTTCGCCAATGTCTTTATAACGTTTTTACTTTCACATACCGTACA
TGTCACTAATCATGATGATTTGTTGTAGGGAATGCGTTCCCGCATAGAGGCTACCATTAATCGTCGCCTTGCTTCATTTT
ACTCTGACCGTATCCGAGAAAATGAGTGGATAGTTATCAATACTTTCTCAGTTCGTCTCCACAACAGACCATTGTTACCA
AAGTTTCAGGATTGCCTGCAATACCGTATTATGATTTTACTCCTTTTGACTACATCATCGAGAGGACAGTTTCTACCGGA
GTGTTAGTCGGTTAGTATATTTGACTGTCTATTCATTTTTGTAAATATGTACGTACACATAATGCTTTTATCTTCCATTA
CGTACACCAGATGTTATTGGTGCGCTCATTGAGGTTGGCAATTTGACCAAAGACTACCGTGGGCGGAAGCTTCCTTTTAA
AATAATGGATAAACAGTAAGTTGTTTATTTTTAATGTTTTTGGCTATATGTTTGTTATATCCTGTGTATAATATATATTC
TCTGTAGCAAGGAAGTTCTTCAATGTGAAGCACCAAAATGATCAAGCTTTCGAATTTCAAAGATTCTTCCAGCGGCTAAC
TGGTCCTCAAAACATTATCGCACTCGTATCTTGGCGTCTAACCGGGATCCATAAACTGAAGGTTGTGACCAATGGCCCTA
TCTCCAAAGTCATTGCTAATCCGGATATACCGGAAGTGGAAGAAATCAGAGTCGTTGTCTATTAGTTTATTTCTTGTTTC
TTTTATTCTAAATAACTACAGATTTGTAACCGAATTTAAACATATCCCTACTTTTATGCTACAGTTTTATCTTCTAATTG
CTACAGTTTACTTATTACAAATACAGCCTAATTGTAATGACCTTCCATGGACGTACATTTATGTTTGTGTACGTTCAAAT
AGGTGTACTCTATGTATAATGTAAACAAACTTAGTTCCATTCATACCCCGCACATATGAATATGATGGCGCAGACGATGG
TTGCATCAGCTCGGACGGGTGCATGACGCTGCATGAGCTTAAGTGCTCCATTGATGTCAGTTTCATGAATTAGAACACGT
ATTGCTTCGTTATACACAGCCGTCGGATTGTTAGCGAGAAGGCACCTTTTGAAAAATGGTCGATTGCGGCCTTCTCCTTG
GGGTCCGGTTGGATTATGGCCACCTCCTACTTGGAAGTCATCGGGAACACGGCACAAGCTGTAGATGTTAGCGTCTTTAA
GGACATCCGGTCGGTAGACAATGTCTCTTCCACGAGTGCCGGATCGTATCAGTGGCTTAAGGTCCAACCAGCTTTTGTCT
GCCACTTTCTTAGCTATCATAGCGAACAAGTCGTCGGAAATAGTGGGATTGACCATCTTAGTAATGAGATACTCCGAAGA
GGTCAAATTCTTCCTCCCATTTAATAACCACGGATGGAGATATTGTTGGGGAAATTACAGTTACATTCAATGAGAAATTT
AATTTTACATTGATGGATGTCAAATCAATGTTACCGCCTGTATACACATCAGTCGTGTACTGTGTACACGTGGACACGTA
GTTTGTACGTACTTTGGTAAGATATCTTGTTTTTGTACGTTGTTAATTACTACATAAAATGTTGCATAACATCCAAAAGT
AATAAACTGTTTAGAAAACAAACAAGTAAATGTAAACACAACCAAACACAAGTTCCAAAAGGCATACAAAACACATAAGT
TTGCTTTAGTTTCAACTTCGAATAACTAGATTAATGGCCCAATTCCATGCTCGTAGAGGTCGACTGCATAACCCTTACGG
AAGTTGTACATATCATCTTCTTCAATCGAAAACCTGTCCTCAACAGGAGTGTTAAGCATGTACAACTCAATAAACTTCAT
CGCGTACGGACCGCATTCTCCGGTAGTTGGATTTTGTGCTAGACGTTGATTCCTTATGTATGTAAAAGGAGTCACGGGAT
AAGGCTTATCGAGATAATCTTTGCATGTCGCTCTGACTAGGTACGGTAGCATCTCCATTATTGGAAGGATACGTGACCTA
ACCACAGACTCCCGCGTAAGCGAACGCAAAGGATCCATGATTTCAATAGCACGACGTTGCAGGCATATAGCCAACCCAAC
CCAATGCTTCTCATCTTTCCAGTTCATGGGAACAGATATGACGTCCACATCTCTGATCCAATGCAGCTGTGGTTCACGAT
TAAGGCATTCTCCCTTGGGAAACCGTGTGAGAAGTTTGTCCCATTTGAAAGTGTCGGGTTTACGACAGGATCTGAATGCA
GTGGCACAACTTGACAGAAGGAAAGTGAGTCTGGGATCCACCCCGACATACCGATTTCTCTTCATATGCTCCCCGTTCTT
ATGCCACATCAAGAGTGCCATCATTTCCATGTGCTGAAAAGTACATAAAAGTCTGATGTTATGTACGTACTTTCAAAAAC
ATATTATTACATATACGTACAATTACAACAGTGTACGTAATTAATGGTCACTTACGTATGAGCCAACCCAATCATTAGCC
TCGGCTAGAGTTGTGAAGAATTCGTTGTCCACTTTCCGAAAGCCGAAAAGAGTATGGCACCTGAAATTAGTAAGACATAT
GAAATAGTTATGATTGATATAAGATTGACAAACAAACAGATAATTGTGTGAATGCACAGATGCATATATTTTTTCTTCTT
GCATTATATTGCATAATTTCTGGAATTTAGCTTCGTCAACCTTCTCCAAAGGATTGTACAACGAATCGCCAGCCTTAACC
AAAACCTCCAGGCCTGCCTCTCTCTCCTCAACAAATGTTACATCAGGATCTTTTTTATCATCATTTTTGGTGTCATCGGA
GAAGTTAACTCTCCATTTTACGCTTTTCTTCTCTTTCTCA