miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0001041
Located between position 31620086 and 31620174 on chromosome 04 strand -
mature miRNAs for MI0001041:
         osa-miR395c (MIMAT0000972): GTGAAGTGTTTGGAGGAACTC

References
[1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
[2]Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L, Cell Res. 15:631-638(2005)., "Molecular evolution of the rice miR395 gene family"




>promoter (3kb upstream pre-miRNA, by PMRD):
TCAGCAACTTCCACCCTTGCCTCAGCCTCTTCTAGCTGTAACTTCAAAGCCTCTTCAGTAGCATGAAGTGTCTGGAGTAG
TGCTTCAAGCTCTAGAATCTTCTGGCTTGCATTTTCTGCAGCAGCTCTGGACTCACCATGCTGCTCATTGATAGATTTCA
GATTTACCTCCAGTTCATCTTTATGTGACAGGGCTTCTGAGAGGAGCAGCTGTGCTTTAGCATGCTCATCTTCAGCTTGA
CGCAGAAGAGAGTCTCTCTCTGCAAGTTTTGAGTTAAGATCAGCTATAGTCCCTCGGAGAGTTTCATTTCCGCCCTTTGA
TTCATCGAGCTCAGTCTGCAGGTTGAGTATCTGCTCCTGTTGCTTCTCCAATGTAGCTTCCCAAGTCTGTTTTTCCTTTG
CCTGCTCTTCGAGCTTGATCTCCATTTCCTGCAAATTCAGGATCTTTGCTTGCAGCTCTTCATGCGCAGAAGAAAGTTCA
TTCTCTAATTTAAGAGTTTTTTCCTTCAGTCGATTCTTCAGATGAACGATGGAGACTCAACTCTTCAGTGAGATGACTGA
TGTTAGCATCCTGAGAGGCAAGCTTCTGCTCCAAATCGTCCACTTGTGATTTTGACAACTCCAGTGCCTCTTGTACCATC
TTGAGTTCTGAGAGCGTGCTTCTCAGTGATTCTTCCACTTGCTGATGATCAATGGCCTTATCTTGATGCCCCTTTATCTC
TTCTTGAAGAGAACTGATCTGAGCTTCCATCTCTTTCATGTTCAACTGTGCCGTTTCAAGCGTCTTGTCAAGTTCTGAGG
CCCTCTTCGCCTCCTGCGCAGCATGCAAGCTTCTTTCATCCTTGAGCTCTTCAAGTTTGTGGAGCTTGTCAGCGGACGCA
GCTAATTCAGCTTCAATTTCTTGAATCCTCTCCTTTGAGCTCTCAAGCTCAGAACCCAGCTCCTTCAGTGACTGAGTTGC
ATCAGCCAGCTCCTTATCTTTATCAGCTAAAGATCTCTGTGCTTCTTGTAGAGAAGTGTAATGCAGGTTCTGCTTGTTTT
CTGCTTCTGTCACGCCCTTTACCAATTTCTCCTTTTCCAATTCAAGCTCTTCAATACGCCTCGTTAGTTCTTCCAGTTGT
TTTGCTTCTTGGTTTAGCATGGCAGATTCTCTCGTGAGCGCTTGTTCTTCAAGCGCTGCAGTTTTTCCTTGCTCTATGGG
ACTAGCCTTTTCTTCTTCCACCACTTTTGCAGAATCAAAATTCTCCTTCACATCTATCAGCTCAAAACCGTCTGATCCTG
TGCCATCATCCTCATCGTTGTGTGCTTCCTTCACTTGCAGATTTGAATTACCATTCACTAGATTTTCCTTGTCATCATCA
TGTACCTGCAACAGTGGCACTATGAGAATTCAATGATCTCTGGAATTTCAAGCCAAATGATAAGGATGTCATCAGTGAAG
CATACTCTCCATCTAGAACCTTGCCCAATGTAATGGATGGAAATAGGCATGCCGTGGAAATATTTAAGACCTTAAACTGA
CAACTAAAATGAATTTTATAACACAACCTCATCTAACCAATCCTGGGAACCGCATTGCAATGTTCAACATATAATTCAGT
GATTAGTGTTCCTTAGGGGCCCAATCTTTATCTTGCTTTGCAACTTCAGGATTGAGATTTTCAGGATTCCAGAGACCAAT
TTAATGAATAAAAAAAATAATGAACGCAAGTACGCAACATCCTGTTCAGAACCCAAAATGAAGTTCAGAAACTGCCCTTT
TTCTGTACCTCAAGAAAAATGCTAGTGTGATAGTGCTGGAACCCAGAGCACTAAACTAAAAACGATGAACAAGCTATTGC
AAGGGACATAAATTAAACATCCTAACAAAATCTTGTACAATTGGCAACTATACTCATTTATCAAAGATCATTAGGAGTCG
CAAGCATGAACTTAACACTTACTATATGATTAATGATATGATATCTTACCTGAGCCTTGTCGACTGCCTTATCAGGCAAC
TTAGGAGCAGTCACCTCTCCTACTTCTGCAGCCTGTTCAACTTCCATCTTTGGAGGCTACTCTCTCTGCAAAACTAAAAG
CAAGAACCATCAGCATCAAATCCTTGCACCAAGCTAATGTGCAATGATTCCACAACCTACAAATCGAATCCTATCTACCA
AGGCAGGACTGATTATAAAAAAGAAGTTGATCAAAAAGTCGAACAAGATTTATATTAGAAAACAAATGAATGCGTGTACA
GACTGGATGACGAAGGATCAGATAAAAAGCAACAGCTGGAGTCCAATTCTCCTGATAAAGTAAAACAGAATGGAATTATT
AAGAATCAGCTGATCTCTTCTTCCTCCTCCAAAGCCTACCAACTTCACACGAAGCGATCAGTAAAAAAAAGATCGCATAT
TTACACGCACAGGACATGAACTAGCACAAGATCTAATCAATCAACCAATCAATAAATGATCGATCGAAATCTGAATCAAT
CAATCAATAAATGATCGATCGAAATCGAGGACCTTGATCCGAGCTCACTGACCTTTCAAGAACCACCCTGAAGCTACTAC
CAAACCAAACCCAGCAACCAACCAAAATAAAAGCCGGAGACGAAAAAAAACGACGGTACGAGCTCTCACCAACTTTTCCC
ATGATCACTGCCTACCAAAATCAGAGACATGCCAGCTGCAGCACTCAAAAAGTAACAAAAAAGAAAAGAGGGACGATCTG
ATTGAGACGATGAACAGAACAATCATCTTTTCTTTGAAGAACAAATCCATCAGTGGCAACACAACATGCATGTCCATAAC
AGAAGTCCAAGACCCGATCAAAATTTCCAAAACGGAAGGGAACAAAACAACGGGAAAGAAGCAAAAGCAACGCAAAAATT
AAAAAAAAAAAAGAGGAAAGCAGCTGTAATCTCAAGAACTACCACCCCCATTAGGACGATTCAGAGTTTCAGACAGAGGA
GCTCGACCACTATTCAGATCGAAATAGCACAGAAAGTAAA