miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0001431
Located between position 25230568 and 25230667 on chromosome 5 strand -
mature miRNAs for MI0001431:
         ath-miR420 (MIMAT0001328): TAAACTAATCACGGAAATGCA

References
[1]Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
[2]Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"




>promoter (3kb upstream pre-miRNA, by PMRD):
TCTTCTTTCCGGAATCTCTCGGAGCTGAAGTAGCAGAAGCGTTGGTGATCGAATCTGTAATCATGATTCCGCAGATGAAT
CCTGACGAGTGAAATTACACAGTGGGTGAAGAATTTGAAATCAAAAGATGAATATTCTCAAAAACCCTAATTCAGATTTG
GTGGCTCGAGAGAGAGAGAGAGAGAGAGAGAAGAAACGTGAAGATTTTTTATTTTTATTTTTATGTTTTTTTTTCTATTT
TTGTTGATTTAATAAAAATCAAAGAAAAAGAGAAGAAAGGTGAGAGAGATAATATATAAAGGGATAACGGAAACTCCTCT
TCTCCGCTCAGACAATTTCGTTCGATGCTAAATGACTAAAGTACCCTCAACGTACGTGTGGGTTCTTCTGTAAGTCGGTG
AGTGTGCACGTGTGAGGTAAACGATGTCGTATTTTTGAGTCTAACTATGGCAAAAGAGATATACTTTTACCTTTTTTTTT
TTGTGTTCTGAAAAGATCTTTGATGATATTTTTTGGGAGTTTCCTTATATGCAATTTGCAAACTTGTAATCTTGTGAGTG
AAAGCTGTGTAATGATTCTTTCTTCTTCTTCATACAAAGATATTTTTATGTAACCCAAAAAGAAAATACTATGGTTTTGT
TGGTTTTTTGTTAGGTGCATATAGTTCTTTTATAACAATTTTTCTTCTTCGGAATTTATGGCATGTTAGTTATTATTGAT
ATGTTAAGCTACATGAATAATTAAATAGAGTTGAATAATAAAAACATACAACAAACCAATACAGTTGAATAAAAAGGTTG
CAAAAGCTAGTTTTAGTGAATAAAGGGAAATGTTTCAATGGTCAACAACAACAAGTACAATTTTATCAATCTTTTAAGTA
CGTAAAAAAAGTTGTAAAACTTGATCTATGACATAACTATTTATTGAAAACGTAAAAGAAAATCTAGAAATCTAGAAAAT
GAAAATAATCCTTTGGATCTTTCTTTCTTCAGTTATTATTATTAAAGTTAAAAAATGACAAAAGTTTCTTCTTCTTCAAC
CACAATCAAATGGGTCTTCTTCCTTTACAAATTTGATTGGGAAAAACAACAATACAAAGAGAAATGAAATGATAAAAAAA
AGAGTCAAAAGTAAGAAAAAAAGATAGAAAAATATGGATTGAAGTGTTTTAGCTTGTAGATTCTGAGATGCTTTGAAGAG
AAGGCTGCCAAGCTCTAACTTTATTGGTAGCTCCTCCTGTGTTCATCATTCCTCTCTGCTTTTCATGTATCCTTCTCTGT
AAATCAAAACCAACTCTATTATTCTTTTGTAACACTCTATCGTTTCAATCAGAGAACTAAAACTGAAACATCTGATACAG
AGCAATTGTAGTATGTGATAATAATACCTGAGTGTCTTTGTCAGAAGCAGATTCAGATCTTAGGGTTAGTGGGTTAATCT
CTTCTTCTGCAACAGAAAACTCTCCATGAATCTTCTTCATCTTTCCAGATTTCTTGGCTCTTATTCCTTTCATCACCTCT
ATTAATAGAACACAAAAAAGAAAGACTGACTTAACATCAAAAAGTGAAGCAGAACAAATAAATTGATAAGAATCCTGAAA
ATTAAAGCTTTTAGTTCTGATTTGTAAATTTTATACACTTCGTATATGATGATTGTAATCAAACGTGAAGCAGAAGAAAC
AAATTGAAGAAAACCCTATAAGTTAGGGTTCTGTTCTTTCCTGAATTTAAAACTGAAACATGTTCTGTGTGAATTGTGAT
TAATATATTATATACCTTCGGAGGAGATGAGTCTATAAACATGACCGAGCAAGAGGTTATCAGAAGGACGAAGAAGCTTT
ATACGAGTGACGCGGAGAGAGCCACCGTGAGGTACGGCGGAAGAGAGGAGGAGAGCCACGTGGTGACCGGGATGGGACTT
AATCACTTCGCTCGCGTTTACTGTACAGTAAAATCTAACCGATTTACCGTCTGGTTGTTGTATCACCGTCGTTGCCGCCT
CCGCCGCTTGACAATTCCCCATTTGTTTCTCCTCTCACGGCGGAGCAAAGCAGGAGAGAGAGGAGTGAAAGAGTAAAGCG
TAGGTGAGGGGTCTATACTGATTTAATAGTTTCTCTACTCATTATATATACTCATCATTTTATTTCTATACAATAACTAT
AAGTATAAGTTTTCATGTTATTATTTCATTTTGTCATCATCAACTATTTTTCGTTTCTATGGAAAAAAAAAAAGTGGTGT
GGAAGAGGTTTTATTTATATATGTATCTCCATTATTCGATAAATGGTTTAACATTTAACAAACAAACAAGAAAGAAGAGA
TAGAATAATGATCGTAATTGCTTAAATGATTATTATGTTTTAGAGTGTCCGTACAGAGCCCCAAGTGTTTGCTTGGCTGG
AATCTTTCACGAAAAGTAGATTCCAAGCAAAAATAATAGTTAAATCTTTAAGCCTTTGATACTACGAATCTATTTATTAA
CATTTAAATTCTTGTTCATGCTATATCATTTAGCTTAGGTTCAACCTCTGAAGAAATTCATAGTAAATCTCTACTTCAGA
AATTAGTCACTATCTTTTTTAGATATACACATAACTTAATATGTGTAAATCAGTGTATATATACACCACCTATATATAAA
TCTCTAGGAAAAGTCTATAGTCTTCATACATCTAAAGTTAAAGTATCCACAAACTATTGGACCACAATTTAGATAATACT
TTCATCCAATTTCCTACTTTATGTTCTGTGTTCATTTTTCTCCTAGTATAGTTGTATTGTTTTAAGTAAATACTACAACT
AACAAATTATAGAATGTAGCAGCTGTTTATAATTTATAATATAAAAATGATCAAAAACACATTTGTAGTTATATAATTTA
AACATTCAAATTTTCAATTCAATACGTAAAGATCAATAGTTGCAGAATAATAAACAAACAAATTTTTTTTTTGTCAACTA
AATAAAAAGCAACTTTATAAATCATATTTTTCTTAAGCAA