miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0001429
Located between position 6516218 and 6516290 on chromosome 3 strand +
mature miRNAs for MI0001429:
         ath-miR418 (MIMAT0001326): TAATGTGATGATGAACTGACC

References
[1]Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
[2]Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"




>promoter (3kb upstream pre-miRNA, by PMRD):
CGCTCTCTTGTGATAAGATAGTTTATCTTTATTTATCTGCATTTCGGTTGTGGACAGGCATCAGTTGCAACCAAAGAGGT
CAAACCAGTCCCTACTAAGCCTGTCACTCAAGAACCAACAGCTCCTAAAGAGGATGAAGCACCTCCAAAAGAAAAAAATG
TGAAACCTAGGCCGCTGTCTCCTTATGCCTCGTAAGAAAACTTGTTTCTCAACCGCAAAAAAATAATCAAATATGTAACT
AAAATGACCTATTGGCATGACATTGATTGTTTTCGATTTGTCTTGTTTCTTTTTTTTTGGTGAATGTGATATATATAGCT
ACGAAGACTTGAAACCTCCAACATCTCCTATTCCAAATTCGACCACATCGGTCAGTCCTGCCAAATCTAAGGAGGTAGAT
GCCACTCAGGTTCCTGTTGAGGCCAATGTAGTGCCAGTGCCAGATAGTACCTCAAATGTCCCAGTAGTAGAAGTAAAGCA
AGTTGAGGAAAAGAAAGAGAGGCCTCTTTCCCCTTATGCCCGGTAAAACCTTATTGTCTTTGCGACTTTATTATATTCAG
GAGTCACAGTTTGAGTAATAAATATGTGAGAAGGTAATGATATCGAAAGTTTGATGGTCTTTTACTTGGCCGTTTTATGA
TGCAGCTATGAGAACCTAAAACCACCCTCATCGCCCTCTCCTACAGCTTCGAGTACCAGAAAGAGTGATTCTTTGTCGCC
TGGTCCAACCGATTCTGATACTGATAAAAGCTCAACAGTTGCAAAAACTGTCACTGAGACGGCAGTTGCAACAAGTGTCA
CTGAGACCTCAGTTGCAACAAGTGTACCTGAGACAGCAGTTGCAACGAGTGTCACTGAGACAGCAGCACCAGCCACATCA
AAAATGAGGCCTCTTTCTCCTTATGCAATGTAACAAATCTTCCTCTTATGTTATTTAGTTCCTCTATAAATATATCAAAT
TCTATTGTGGTCCGATTTTTCCTCAATGCATCTACACTGTCTTTTGCAGTTACGCAGACCTGAAACCACCAACCTCACCA
ACTCCTGCATCAACAGGTCCCAAGGAAGCAGCATCTGTAGAAGACAACTCAGAGTTACCTGGAGGCAATAATGATGTGCT
GAAAACAGTTGATGGAAATCTGTAAGTATCTTGAAGCCAGATTTACAAAGTGTGTGTAGACTTTCGTTAAGGAATCGATC
AATACAATATCCCGGGTTTTTTGCTTGTTGTTCAGGAACACAATTCCACCTTCTACACCGGAAGCAGTACCTGTTGTTAG
CAGTGCGATAGACACTTCCCTTGCTTCAGGAGACAATACAGCTCAGCCAAAGCCAAGGCCTTTATCACCTTACACAATGT
GAGAATAGAGAGAAGCATGCTAGTTCTAAGTGTGTCCATTGTTATTACTTCTTCTTTTGCGACCTGAAAGACTGAAATGT
TTTTGCAGGTACGCGGACATGAAGCCTCCAACATCACCACTTCCATCTCCAGTCACCAATCATTAGCTATGTGAGACGAG
AATTGGCCTCCTAAACCCTGGAGCTTCTTCTTAATTGCAGGTTGTAAACAATGAGTAAGAGAGTGATGGGGCAATTCAGT
TTTGCAGGTATGAATCAGTGAGCTTATTTGTACAATAATACAATATTCATCAACATGCCTTATATATGAGTTCTACTTTT
TTTCTCCTGTTCAACGATCAATGCAGTAACCATATTGTTACCCTATCTCATACATATATGATGACCCAAATTAATTATCA
TTAGGCTTTCATATAGCTGTCTTATAATCTCTCTTCTGTATTCTTCTCATTCAGTCAACTTTATGTCTTTTTGTATACAG
TTTTAATATAAAAAGATTGGGAAAATTTAATTATAAGTGCGTATCTATCCATTAAAAAAATCGATTTACTAATAACAACA
ATTCATGAATGGATACTAAATTAGTAACTTACTATGTGCATGGTAAGAAGTGTCAAGACTCTTAGAAGTTAGTTGTGTTG
AAATTGTGGCAATCGAGAGACAGAAACTGAGAAGACAAGAGGATTGTCGCTTATGTCTTGGAGCGAAAACTACGGAACAG
AAAACTTAGAAAGTCACAATGAAGAACACAATCCCAAAAAATGAATCTTCTATTAGATAAATCACCTCTCTTGGATACTC
TTTGTTTCTTTTCATTTTATTTATCGAGTACCGAACGATAATTAAACCTTCAAAACACTTGGAATTTATGTTTAGTTACA
CTTCCAAACAAAACCAACACTAACAACAATTTGTAAATAATGTGATTGATCCAATCGTCAATAACTTCTTCTGTGTCCTT
GGCTATTGAAGACTAGCTAGGCAGTTAGAACATTGAATAAGTACGGGGTTTATTCATTAAATATGCATCTCAAATTCTCC
ATGTTACGTAAGGTAGCTTTCTTATAGAAAAAAGGGTTTTCTACTTTCTCACCTTTCATCGCTTTTAAGGCATTCCTTTA
CCATTTCAATCAAGTGCTTAGTGCTTGCCACTCCATCTCTTTAACCAAAAGACACCCACCAAATACCTTTTCTAATTTAC
CATTAGTAACTCTTGCGGATAATGCTTTGTCAAAAGATGTTTTCATATATTCGTGAAATGCGATTACAAATATTTGAATT
TTAGTGGAGCTTTTAAAAATGGTCCACTTGACGAGTATGCAAACCATATAGATAACGTGGAACTACATATCCTTCAAAAA
TCTAATATTTATATCTTAACTGTTCCAAATGCTAATAGCTTTCCCTCGAAAAGTACTATGAGCCTATCGAAATGTATCGT
TATATGTTCATATAGATTATAAAGAACAGTTAGAAATCTTTTTCATTTTATTTTTCATTGAGAAATCTTGTAATGTATCA
TGACATAGATAAAGATAACGTGCTGTTTTGTCACAATATATAGAATAATGTGACTACTTTTTGTCATTACAACATAAGAT
TAGCGTACAAATACAACCATGCATGTTCCAATCATTTAAA