| Basic information from miRBase |
| hairpin accession number: MI0000987 |
| Located between position 9878168 and 9878379 on chromosome 3 strand - |
| mature miRNAs for MI0000987: |
| ath-miR169m (MIMAT0000918): TAGCCAAGGATGACTTGCCTG |
| You can find this miRNA in ASRP: miR169 (accession: ASRP1514) |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [3]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [4]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [5]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TAAAATATGATAAGGGAATAAAAGTACCTTGCTTAAAACCAAATACGTCTTCCCATAGTGTGGGAATTCCATCAGGTAAA
ACATTAAGCATTCCTAATAGAGGTTTTGACATGAAGTTGTTGACATGTGTGGCTGCGAAAATTAATTAATGTCTATGATG
AACAAAGATGTACATATTTTGTTATCTTTTGCGACAAAATAAGAATCCCGCAGACCTAGCTTGTGTACCTGGATTAACCA
AGATCAGAGCAAGATCAACGTTGGGATTCCTGGCTGCAACATCTAACGCAAGACATGCTCCAATAGATTCTCCAACTAAA
TATATTGGTCTATTTGGGAAACGGTAGTTCTCCGACTTAACTGTCCTCTCAATAAGCTTCACCAAGTCTAAACACACACA
AAAAGGTTTAAACGGGATTAGCTATCTTCTCAGTTAAATAGCCATTTTGGTACTTTACAAGGGGGTTATAAAGGCACCTT
TAAATGGAGTACGATCACTGACGGGAATGTGAAGGCACCATATATCAAAAATCCTATTCAAATACAAAAACTTTAAAAAT
AAAGATCCCTTAACATGCCAATACTTCAAAATTAAACTACCTAAAATCAAAGTTACAAAAACAGAGAAACCATACTCTTT
TAGATACAGGGAATGTTAAAAAAATGGAAAAGCTAATAGAAACTTAAAAGGAAATGAATAAAACATTACTTACTCCCCAA
GTTTCTTGTGATGACGAATGAGACCTAGTCCAGTACCATCGATCCCTGCAAGTTTTAGTTTTCTCAGTTTTGTTAACTTG
AAAAGACTTAACATTTCAGTGTTCCATGGAAATGAAATAAAACTTCAAATCCGTAGAAACTATCCCAACTCAACCAAACT
GAATTATCGGTATCGTGTCTAGGTCAAGTCCGACTAATCCGGAGGTGAGCATGCTCTTTGCATGTTACCGCAAACTCACC
CTAACTAAAGCACCCGGACCAATGCCCAAGAATCCAAGTGGTTACACGTGTATAACAACCTTGTTTGAAGTGTAATCAAG
TTATCCCATCGGGAACCACATTCATTCATATTACGATAGAAAGGCGAAAGAAGTTTTATACGACGAACCAGGTAAAAAGA
GGAGGAGAGGAGAGTTTGGCGCTTGAGCTCTGCATTCCAACGGAGAGAACCAACGAGGTGGACCTCCTCCATCCCCAACG
AAATCTCTCGCTTCTTCCAAAAAATCCAACAAGCTTTTTCGCAAATCTCCATCTTCGAATACGGATTGTGCACCACGTTT
TCATCTTTATTCTTCCGTCTCCGTCGAATACCCCTAGAAGGAGGAGGAGGAGTGGATGTTACGGATTTGATCTCCGTGAG
TCGTTGCTTCGAGGCGGAGGTCCGGCGTCGTCGGAGATATGACTTCGTTGAACAGTAGGAATCAGTTACTCTTGATGAAG
ATGAGACGGCACAGAGACCGAAGATTGAGCGAAGTAATGTAACCCCCATTTGTGTGAGACTTTTGCCGTTTTTCTATTTG
TTTATAATAAGAACACGACAAACTCGTCCAAGCAAAGATGCGCGGAAAATAAAAACATAGTTGTTTTTTATTTTTTGAAA
AAGTAGTACAATTAAGTATAACCTAAAATACAATTTACAAACTAACTTTAGTTGAACTTTAATTTAGTTAGAATCAAATT
TGTGTTTGAGAGAGTAATTGAGAAAGTTGTCTTTCCATCTTTCTGTATTTAATTAGTTAGAATAAAAGTCCACATTTACC
ACCTCTTGTCTTGCGACTTGTATGTAAGAGAGGTTATAAACACCAACAACAGTGACATTTTGGCTCTTTTTATAATTTAT
ATACAAATTTAGACGTGCAAGTTTCCTCTTCTGAATTTCTATAAACAAAATAAAATTTACAAAACGTTAGTTGAACTTTA
ATCGGCAAGGTGAGCCAAATCTCACGTACAAATAAATCGATATGACACAAGATCCAAATGATTTTAGAAAACTACCTATA
TGTATCAAAGATCCGTTTCTTTATTAAAACATGCAGTTAAATGAAATATAGTAGTATACAAACAAATCTATATGTCAAAA
ATTTGAACAAGACACTCCAAAAAAGCTAGTTACTTGTTGTCCCATATATACTATACCATCCAAAAATGAAAGGACATAGT
TTGTGAACAAATGTTTTTTTTCTTAGAATTACTTGATGGAAGCATGCACTTTGTGTGTAACTGGAATTATGCAGAAACGG
AAACAAAGGAATTTTAGGGGAAGTGTTGGATATATGATAGAGTTTCATCACTACAAATCTTTCTAACATAGTTAGAGAAA
ATTCAAAAACAAAACTCAGATGGAGGGAGATTGGAGACAAGTTGTCTAAGACCACCAAATCCCATGTCTTTGCATTTACA
TAAAAATTTGGACTATATTTGGTGGTGGGAATGAGCCATATCCGTGCAATAATATAAGCAACGCTTAGACCACTTGTGAA
AACTCAGATAAGCTATTTTAATGTGAGTTTCTAACTTAAAAATAGCGTATCATGTGAACCAATAGTCCATATATCAGATA
TTAAATTGATAAAATCAGATACTATACTTGATCTTAGCCAAAATGCTGAGAAATGTATGAATAGTGAGAGAGAGCAACCT
CTATTTTAACATAAATAACTAACAATTATGTGATAGGTTTTAGCCCAACTCAAAATTAATCACATGTGAGGCTTTAGCCC
AATTCAAAAATTAGCCCACAATATATCCTCAGTCGTACCAGTGAATAATATTTGTGTAAACTTTTATTGCAACGACAAGA
TGATGACATTCGAACCAAATCAAATCTCAACAATTGGAAATGAAAAAGATATGGATCGGATGACAGAAAAGAGAATCGAA
GACTTTCAAATGAGATTCCACAATGTCCTAAAAAAAATATGCCAAAAAGTATTATGACTCTTCTTTAATGTAATGGTCAA
ACCTTTTTATACCCAATAGTGGTTATATGATAAAAATGTA