| Basic information from miRBase |
| hairpin accession number: MI0000193 |
| Located between position 17825685 and 17825857 on chromosome 1 strand + |
| mature miRNAs for MI0000193: |
| ath-miR161.2 (MIMAT0006779): TCAATGCATTGAAAGTGACTA |
| ath-miR161.1 (MIMAT0000181): TGAAAGTGACTACATCGGGGT |
| You can find this miRNA in EMBL: (accession: AJ493635) |
| References |
| [1]Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants" |
| [2]Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP, Cell. 110:513-520(2002)., "Prediction of plant microRNA targets" |
| [3]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [4]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [5]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [6]German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ, Nat Biotechnol. 26:941-946(2008)., "Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends" |
| [7]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
GACGAATGGTTGTGCTACATCACAAGAGAAGAAGAAGACAACATAGTGGTAGACTGGTAGTCATTAACATAAGGAATTTA
AAGGCATAACAAAAATAACCTACCAATCTCCATCCAAATGCTATGTATCATACGCCGTCTTCTTGTTATGGACCCATATT
CATTTTTGAAAGGTTACTGTATTGCACAAACCACAGATGCAGCTTCTTTTATGGTCTCAATTGCATGCATTAGAGCTACA
ATATTCAAGTCTTTAAGTACATGACGCTCTCACTCTGATCTCTGATCCATAAACATCAAACTAAATTGAGTAGGCACAAA
TTCACCCTTCTTAGGAACATAATGGTAATGTATACCTTTGATTTTAATCTCTCTAATATCATTACTTTGCAGATCACAAC
AAAGAATGTACAACATATCAAACAAATAATCTGGTGTCATTATAACCTTGCCACTTTGAGTTATACCTTTTAACTCCAAT
CCAATCTAACGTTCTTGACCAAATGCAGCGGACAAGGTTGCAAAACCAGAGTTTTCGCCAACCACTCCTTTGTCCTGACA
TCTTCTAGAACCCATAAATTCACTGTACTCTTGTCTTCAAGATCGGTATGGTAAAAAACAGTTACTTTTCCGCCATATTC
TATAAGACACACCTTCTTGATGGCTCTATGCAGGCTCACATCTTCTTCCCTGTGAGGTACTCGATCATTTTGAATTCTTC
ATATCCGATGTCGAAGCTCACAACCATATAATTAGACGAATCAATCCAAGCCAGGTAATGTATAACCCCATTCAATGATA
GTCCTTGTCTAAGAGGAAGGTGAGGATAAAAGTCCACGGGAGGCAAAGTCACCTTTTTCCACGAACCTCCAGGTTTTAGG
TCAAAGACCCAATGGTCTGATGATAAAATAAAATATCCGACGACAACTGAGCAGAGTAACTTTGTACTGTTCGTTAATAG
GGTAATGTCCAAAATAGTAACACCACTTCGACCTTTCTGGAGCCGAGGTTTTGGTTTTTAATTTTATGGTGGGCAAGGTC
ACAAGTTGTCTGGTGGTAGGGTTATACATTCGCGGTTTTTTCAAAAATGTGTAGCAGATGAAGCCACTAAGTTTTTGTAA
GATCTTGCCTCCCCTATCTCGGATGGTCAACAACAAAGGAGGAAGATGGACTAGTAGCGGATGGAGCTAATGATAGGATT
TTAGAGGGACGGTAGTCCTCGAAATGTGATACACAAATGTAAATTCGTTGAGATGGGACCTTAATGAAACGACTGGTAAA
GTATGGACTATGGAGAGCGTATGATAGATGACCAGAGCTTTGAGACGCACTTGAATCCATTAGGGTTTTAACAGGGAATC
TCGTAAGAATCTCTGTCACCACATCCGTTGGAATCTCCAGTAGTGCTTGGCTTCGTCTTCTTTTCTTCTTTCTCCACTGT
TGGATCACTGTTAGACGAAAAGACAAACCCATCTCAATCCCCACCCGAGTTTGAAGACAGAGTCGTTCAGTCTTGGGGAG
AAAGAAATCGCGGTGATCTCTAGGGTTTTGAAGATTGATACGAATTTTGTAATTCCTCTTTAGAAACGGCGCCGGTTTAA
GTGATAGTATTTTCATATGACTTACGTAACAAAACTCTTCAACATTGTCGTCCAAGAACTCCAAGTTCGTTAATTTCAAA
TCAAGATCAGAAGACCTCACAATAAAAAAGTTCATACAAAAATAAATAAATTGTTAAGTTCGTGTTCCCAAAGAATGTTT
CATATACATTGACAACCTGTTGTGCACCCCCCTTCACCATATCTAAGAGAGAAACACAAAACAAAACACACTTACTGATC
CATGTAAACGGAAATTAAAGACAAAACAATCATAGAGGAAACTTACCAATCTCTCCATCCAAACGCTATTATCATCGCCG
CCTTCTTGTTATCGGTCCAATGTATTAGTTGAAAGTTAGTGTCATTGCTGGTCCTCGGTCTTGAGTGATACCATTTCGCT
TCGCTGTTGTTGTTGCTGATGTAGAATCAGATGGTTTTTTGGTCTGAAATTGCTTGGAAGCCATCGATATAGCCGTTCTG
GCAAGAATCTAGCAGACCAAGGGTTTCATAAAAATCAAGCTTCATTGATTATTGGGAATAATATAGCAAACCAAAGAGAT
CGGTGGTGACTTACAGCTCCAGTCTCTCATGGATTGCTCGACGCACTGAGCTGTTGAAACCATAGGCTATTGAATTGAAC
AAGCCCTGAAAATACAACATTCAGAACATCGACTCGGGAAGAGCAAAGATGATCTATGGCGAATTTTATAACTTATTTAT
TTGATAGGTTTGCTACCATTAGTGCAGCTGTCCCAACGTCAAGAACTGAGAGCCAGAAGATCTTATGCCCTGGCTCGATG
AAATCATGGATACGGTTAATAGTGCCGAATGCCCATGATCCTATTAGAATGAGTGGATAGTATCCCCATCTGTTCAACAC
CTGTGGTTTCAGGAAACAAGCAGTGAGGTTTTAATGATGAAATCCAGCCACATGATACAGAACTAGTATTGGCAATAAAG
ACAGACCTTTAACTCTGCTCTATTATCAAATTGATCGACTCGGTCTGACATTCCAACTGCCATCTGAAATTAACATTGCC
ATTTCAGCACACAGCCAAGTGTATCAGTAACGTTTGTGAACTACTTTCAGAAGACAATGTTATTAGAGATGAGAGAGTTA
CATACACGTCTAGCATTTCTTAGCATCCGTATCACTTGGAAGTAAGTAAACCCATTGTAAAGAATGGCTCCCCAAAGAGG
AGCGTAGAAAGTTAAAAAATGAACAGCCTGCAAAATTCAAGAGGTGATATGAGTTCCAGTAACGAAGAATAAAATACTAG
TCTACATTCATCTGGCCCAGCGTTGCAACAAAAAAGTTCAAATGCCTTTTGATAGGCATTGAAATCTTTATGCTCAACTA
AGCATTCTCACTTGCCTTTCCCTTAAGACCAGTTTGCGTC