miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0001425
Located between position 25137456 and 25137563 on chromosome 1 strand -
mature miRNAs for MI0001425:
         ath-miR414 (MIMAT0001322): TCATCTTCATCATCATCGTCA

References
[1]Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
[2]Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"




>promoter (3kb upstream pre-miRNA, by PMRD):
ATACACCAAATCTTTTTCGATTTTCATATAAATACACAAAAAAATTCTCTCATTATGATCGGTGGCTTGTGTGATAGTGT
AGCATTATTATACTTTAAACGAGTTTAACTATTATGTTATCGTTAATGAGTGTCGGAACGAACTAGATTCACGTACTAAT
TTTAGTAGAGAGACAAACACAAAAACAAAACAAAAATCTTGTACATTGATGGACATGTTACAACACCAAACGTGTATAAT
CACGATTCCAGTTTTACGACCAAAGACGTAAAAGTTCGATTCTGCCTTAAGCATAGACTACTTTGGCTTAGGCCTGAATG
TTTTAACCGTAGTTGGCTTGTGGTTAACTCTTTAACTAATGGTTATCATACATCCCACATTCACTAATGAATCTATCTTC
TGCTGCTAAAACTAAAATGGATCTTAACTCTTTCGGATCCCGGGCTTATTGGTCATAAACCGAACCTATGATCATATCTA
ATGCCATGCATTGGAGGAAAGCTTGAAGACAGTTGAATACCTAGAGGGCCCATCTCATATTGTGGTCGAAGGTGATTATG
ATAATTAGTATGTCCTGTGTTACTATTCCTCTGTTCCCATAGCCACGAATCTGCGTTTTCTGGAATGGGTGCGTTAATAC
CGGGAAATCCAACTGTCATTATCTTTCTTGGCTCTTGAGGGCTAGCTTTTTCCAAGATTTCACCTTCTTCAGTCTTAACT
TCTTCCTCTTCTTTAGTCTCTTCCTCACCAAATATAGTTATTCTCGAGTGATCATCATCGTCTTCTTCTACAGCTAAGTG
ATACAAACAAAAAAGAAGAGACAACGTAGTCATGAACAAAGATGCCTTTGATATGATAACAAGAGAGAGTATGAAAGCTT
ACCAAAATATCCTGGTGGATATCCAATCTCTCGCATTCTGTTAAGCCATGGAGGAGGATCGAGTTCCTACACAAGATAAA
AACCGCTTAATCAGGAATAGCATTTTCTCTGGTCTAATTTTCAATACTGCAGAGGAAGGTTGAAAAAATACCTTTAGACC
GAGAAGCTTACGCGTCTCTGCATCAAGTGAGCCAGGCTTCAAGCCATCATATTTTCCACGTTGAAGGCTCTGATAATATC
TGGATGGTAGACGGGATCCAGGAGTCTGATTTCTTTTTCTTTTATGTTGCCTCCGAGCATTACTAACTGCTGATCGATCA
AAAGGCCTTGGACATTCTCTAATAGAATGACTGTATGCGCCACAGTTGAAGCAACGTGGAGGATCATCAATAATCTCCAA
GCCTCTGGAACAATGAAGACAACAAAAATTCAAAAGAATGCACAAGGCAGATAATAAAGTATCAATAACACATTCACTGT
CACAAGGTAAAACGAAATCAGATTGAAAGACAAAACTAGAAACTGCAACAAAAAGAATCTACAAATCTAGATTTGTTTAC
CCTTCCACGTTATTTGAACCTGAATCTAAACCAATTGTAAATCCACGGTTATAAAGAGGAGTAGTGCTACTTTCCACTGG
AACAGACTTCTTCGAAGAACTGTGACCAGTTTGGTAGTCAAACCAAAATGACTGCACAAGTAAGAACGTATCTATCAGAA
AGGATTACGAAAAACCTGAAAATTTCAAGATTGTATATGCTTGAAAGAACAGTTTCACTCACTACAGATGATGTCTTCTG
CAATCCCACACGCAAAGCAGGAAAGTATGTCTCATCACCAGCTTCTAGTACTTGTTCTTGATCCTGATCATATTCCAAAC
GAAAAGTTTCTAGCTTAGTTAATAACATGAAATAGTCAGCAAACAAGTGTCCTTATCATTTCTTGCAGAATTGCGAAATT
TCGTCTACAATTGTTCTTTCAATCACAACTTGAAATTGATTCACTTTTGCAAACCACAAGGTTTATTGTATTGGCTATAT
AAAGCACTACAGAAGAGTTCAAATCATAGATACCTCGGACAAGGAATTTTGTTCTGCCTCCCATTCTGACCATTGCTGTA
ATAAACTTTCCAGCTTCTGCTTACTATCTCTGAAAGATGCAGGACAATAAGAATCAAAACAAGTAGAACACCAAGAATCA
CATATAATGATAGCAATGTTTTGAGCATTCAAATGTTAAAAGCTTCTTGTTATCGAGTTAAGAGTCTTCGTTTCATCGAA
CCTTGTTAAGTGTTTATAAGTAACATGGACTGAAGGTTGCTGTTCCAGAGAGATTGTTCTGGCTCTTTTAACACCAGATT
TAGCTGACACATGGAATTATGGAAAAGAAAGAAAGAGAACATAATCACAAGCATTCAAGTCTTGGAGCAAATGATTGTAG
AAACTATACTCGAAGCAGAGGTGTTTAAGTAACACAAGCATTAGCAAGCTCCAACAATAAGAAGAAGAATAAGGATACAA
CTAACATCTACTTTCACGGTTTCGACTCTCACATCAACAGCATCCCCAACCTCCACGATCGATGCTTGTCCTGAAAACTG
GCCAGACACATTTCTGAAATCATCTTCTGTTAGATCCATGTCTTCCTCCATGTCTATACTTATTTCCCCCTCCTCAGCTG
ATATAGTCAAGAGCAAAAAACAGAATAAATCCCAAAAGCTCTTCTTTATTCAAATCAAAACAATACATACAAACAAAATA
CCTCAGCAAAGCCAATAAACAAAGCTCAAAGCTACCCTATAAAGCTCTCTAAATTGATGAGTCTCAGAAACAAGACCTCA
TTCTTATTTAAAGTTAAACGTAAAAGCAAAACACTCTAAGAAACGGAAATAAAGAAATGGAAACTCGATATAACTTCCTA
AAGTCAGTATACACAAAGAATACATAACAACAAAAGGATTGAGGTCATGTTTCTAACCTTCCAAACCAGAGCCGCTTGAA
GCTGCCATTTTTAACTAAAACATGTGAACTATTATCTCCTTAAAAAGTTTCACTAATCATCCACCAAAGATAAACCCTGC
ATAACAAAAGCATACACCAATGAGCAATTCCAAAAACTCT