| Basic information from miRBase |
| hairpin accession number: MI0005398 |
| Located between position 22577067 and 22577265 on chromosome 1 strand + |
| mature miRNAs for MI0005398: |
| ath-miR842 (MIMAT0004264): TCATGGTCAGATCCGTCATCC |
| References |
| [1]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [2]Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" |
| [3]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
AACTCTTTTGAGGTACGTTTTTTTTTTGGTGGATTAAAGAGTTTCAAGAAAAGTCTTTGTCATTTGTTCTCCATTTGTTT
GTCAAACGCACGTTCTTGAGCCTTTCGGCCTGCAATCTTTCCACTATTCTCTTTTAAATTATTTTCACTATTATGATATT
GTGCAAAATATTTGTCGAAAACTCGATACTTGTATACAATTTATAAGACATGATCAACTCTCGTTTAAAGATCACCAGGC
ACGACATTACTCTCCACTCATCAAGTATTCTTCTCGCCTCATACACCTGAGGTCATCTCTATCTCCTTCAGTTCACAATG
GTTGAAATGTTGGAAGCGATAGGCATACCGGGAGGCGATAAGTGGGATGATGGATCCGAACATGATGGAATTTATAAGAT
TCATGTACGTGGTGGTCATACCGGTATCCACAGAGCCGTGCCTATGGGTAATAAAAAAGGCATTTGCCTCATGTTTTCAA
AATCTAAAACTTTTTTAAGGCCCCCAAGATGCTGTAACATAATGGTTTTGAAAGACACTGTTTTCCATTCATATAATTTT
TTTATTATTTCTCTTAAAAGTGACTAATCTATTTTTAATGGTTTTATTTATTCACTTTATTTATTTTAAAACAGTTGGAA
TCTGTTTTAGCACTTCTAAATATTTATTAACTTAACATATACTAATTCATCTTTATAGTAGTTTTGTTTATAAATAATGA
TTGTGGTGACTTGATAATTAAAAAAAATTATAAATCTTTAGCAACATGTTTTTGAGATTATAAAACAACAATAAGATTAT
GATAATTTGGTAAAAGCTTTAATTAAAGATGAAGGAAGAAAAATTATGTTTTAGTTATATTATTGTTTTGTTTTCAATAA
TTTATTTAGTTACGAAATTATTTTATTAAAGAAAAAATTGGTAAGGCTATTAATCTCAACTTCGCCTTAAGCCCTGATAA
GTGTGGGCACTGCACTGGGTATCCAGACCATCCATTTTGAATATTTCAAGAACGGACAGCTGAAAAGTGGAGAACTGTTT
GGTGTTTGGGAGTGGTTTCACACAAACGGTATGACTTTAAAATATATTAGGCTATAGAGAGCATAACAATTCGAAACATA
AATAAAACTTGTTTTATCCGATTTCATGTGACTAATCTCGACGAAAATCAGATTGTTGCGAATAACGGAATGACAATATT
TGTTTCTTTTATTTTTCTAATGCAGATTGAGATTGACCATCTTAACAATGAGCATCTTGAATCTGTTGAGAGTTATTACG
ACGATGCACCCTGTTACATTCAAGCACTTCAATTTAAAACCAATTTCAAGGTTTCCGAACTGATTGGATATGGCAAGGGT
ACCAAATTTTCACTTTCAGTCAAGGGAAAGATTATCATTGGGTTTCATGGATATATAAAAAGCCAGAACAATCCACTAGT
AAAATCTCTTGGAGCATATTTCACATGGATTCCTGATTGTAGATTAGAAGCAAAAGGCAGCAAGGGAGGCATACAATGGG
ATGATGGAGCAGACCATGAAGGTATAACAAAGATTCATGTAAGAGGTGGTTTTGAAGGCATTCAATACATCAAGTTCGAC
TATGTCAAGAGTGGACAGCCTAAAATTGGCTCAGTCCACGGTCTCTCGGGTAGAGGTTTCTCGCAGGCGGTATGTATTGG
AATTTCCCATGTTCTCATTATTGGCATGATTTCTAACCTCTCTTTTCTCCACCATTTTCTTTTTCTTATTTGTTTTCAGT
TTGAGATGACCATCTCAACAATGAACATTTGGTATCTGTAGAGGGTTACTATGATGACGAGTCTACAGCCATTCAAGCAC
TTCAATTCAAAACTAACATAAAGACTTCTGAGCTGCTAGGATATGAAAAGGGTAAGAAGTTTTCACTTGCAGACAAGGGA
AAGAAAATTATTGGGTTTCATGGATATGCTGAGAAGAACCTCATTTCTCTTGGAGCATATTTCACAACAGTTTCTGTTAC
TAAATCGGTATGTCACGGTAGTAAGATAATCGAGTCTTGGGATGATGGTGTTTTTGACGGCATAAGAAAGGTGTATGTTA
GTTATTCTATCAATCATGTAGCGTGTATCACGTTTGAGTACATCAGTAATCACTCAGTTGTGAAGCGTCAGCACGGGAAT
AACACATCATTAGTAGAAGAGGTCAGATTCCTTGATAGCTTATACTTGTTGATTATATACTTCTTGTTCTTGACTTGTAT
CTAAAATAAGAAGTTTAATACAGTTTGAGTTAAACTATCCCAATGAATTTATCACATCTGTGGATGGTACTTTCAAAAAC
TCTGGCATGAGGAAAGTGATGTGCGTTACGTCTTTGGTTTTCAAAACATCAAAAGGGAGAATTTCTCCGACATATGGAAG
CGTGACTGGGACTAAATTTGTGTTGGAGACCAAAGATTGTGCTCTAGCTGGGTTCCATGGATGGACTTTTCTTGGTTTTC
TTACTGCTATTGGTGCATATTTTTCTCTGCTGCCTTGTCCTCCTAATGCGGAGAAACTAGAAGCACGAGGTTATGATCGA
GGAGCTTTTTGGGATGATGGTGTTTACGATGGTGTTAGAAAGATATATGTAGGACAATGTGAAAATGGTATCGCATTCCT
CAAGTTCGTTTACGACAAGGACACTCGGATGGTTATTGGAGACGATCATGGAAACAAAACACCACTTGAAGTCAAAGAGG
TAATTCTAATTATCAAACTTGTTCTTACATTTATCTTTGGGAACATATTAGCTTAATATTTTTGTTGATCTGGCACAGTT
GGACCTTGAGTATCCTGGTGAATATGTCACAGCGGTGGAGGGCTGTTACAATAAAGGAATTGAGGGTGACGTGGAATCTA
TAACCATGCTTAAGTTTAAGACTAACAAACGAACATCTATATCCTTTGGATTCGAATCTAGTTCAAGCTTTCTACTCGAG
AAAGAAGGCTTCAAAATCGTTGGGTTCCATGGAAAAGCAA