| Basic information from miRBase |
| hairpin accession number: MI0001015 |
| Located between position 2625950 and 2626056 on chromosome 4 strand + |
| mature miRNAs for MI0001015: |
| ath-miR397a (MIMAT0000946): TCATTGAGTGCAGCGTTGATG |
| You can find this miRNA in ASRP: miR397 (accession: ASRP1794) |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis" |
| [3]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [4]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [5]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TCGTGGCAAGTCTATTACCGAAAAAAAGAACTGGCCACATTATAGGCACAAGAACATTTTTCTACATAACACAAATCCAG
TTTTAACCATTAGAAAGAAAAAGAAAAACATATGAAACACAAAATAAAGCAAAAATATGATAAGAAAGTGATTATCATAT
TTTTCTAATAATAGACAGATTGTTTCAAAAAGAAAAATATACTTAAAAAGTAGAGAAACTAAAAACTGAGAAATAATTGA
CAAAAAGATTGAGAAATAAAAAGAATAAATGTAAATTTATTTATTTGATTTTTATTTTGATTTAAATTAAATGAGGTTTT
TATTTGTTACATTAACTGTTTAAATTTTATAATTAAAAGGTAATTTTTCGAAAATTCACAGATTAACAAGTAAATTTAAT
TTAGACAATCACCTCATACCAACTTCATTTTTGTTTAGGTTGTTTTTTGTCATTTCAGTTGGTTGATCAAATATTTTCTT
AATTGGCAATATTCTCTGTCAATCAAACCTACAAAGTCTCTAAGACATGTAAGTACTTTGGGCGGTGGCATATGAATCAG
TTGGACTAAAAAGGCAAATCTTGTTTTACATGATCCCAAAAGTTGTTTTCATTATTCCATACAAAAAACACGTTTTGTCC
TCGATATACACTTGTGTTGTGTATTTGTATGACCAAGATTTTCAATATCAGAGTTTTCTTATACATCACCGTGCCAAACT
CTAATTCAAACACCAAGATTTCGTCGTTTATATACGGCTGTATTTTTCCATTTCATTTATTGTTTGTTACACTATAATAT
CTACGTACTAAAGATTTTATAGTAGGAATGGATCAAGTTTACTATACTAAATGACTTTGAGTAATTTATATAGATAGTTA
TCTTTTGAATTTCTTGTGTAGGAGAAATGTTAATGATCTTAATCGACCAAGAGACTAATCAATTTAATGTCGCCAAAACC
GAAAGTAGACTTTATACAATGTTTGATAATTTAGTAATGTGGAAATAAGCTTCTATAATCACATGGGTTATATAAATGTG
GTCCTAACAGTACGTCATTTATACGTCATATGAGGTATAACAATATATAATAAGTTGGATATATTAGCATAGAGGACATT
TTTAAAAATGCTATTTAGCTAAGAAAAACACACTTAACTATTCCATTAAACGAATAAAACCCTTAGATCCAACATTAATC
AACTGTAACCACGCTAAACTGTGTTGAGTGACTAACATTGGCTTTTAAATGACTTGGTTAATTCAGTAATATTGGATCTA
GCTAAAACAGTTTGATCAACTTACATTTGAAGATATAATTAATGTATATTCGATTAACGAAGTAATTAGAGTTTTTCTTT
TTCTTTTTTTTCAAATCGGATAAGGTATTATGTTTATATTGTTGTCTACTTATAGCATAATCATTAGTGTCATTAAATGA
TCATATAAAGTCTTCGTTTATCTTTTGTATTTAGTCAACATATGCTTATGTTATTTTAGTTTGAGCTAAAAGTCAGAACT
TTTAGGAAGACATCAGCTATACATGTAAGAATTGAATTTTCAATCTAAAAATGTCCTGTTTAATACAACTAGCTCGAAAC
CTAATAAAATTTGATTTTACTATTGGAAAAAAATTCTACAATCTTACTAAACAATAGACCTAAACTAGCATTGCATGAAA
CTTTTCCAGATCAAAAGCAAACCAAATTTGATATCATTTCATATCTTTCGATAATTGAAAACCATTAAAGCCAAATCGAA
CTGAATTTTGTATAAATAAAACCATATAAACCGAAAACCCTATCCTTTCAACCTTTTATCTTTTATTCACTTGCATATCG
ATTTCATACATGAGCTATTTAGCTACATAAGTGATATTATTCTTGAAATTACAAGTTTAAAGAAGAATGGCATTATAATC
TTGTCTCCAATGAGCGGTGGTTCCAAACTTCTTCAACCTTTTATATCTTTTTCTCTTAAATCTTAAGATTAAACCCGTAC
CCAAAAAAGCCATTATCTTCTGTGATATCTTACCATTAGTCCCGACGTCTTCATTGCGCTTCGTACCGGTGAGCGAAAAG
GCAAATGACACTTTCTCAACGTCACAAGATCAAGTTCTCTCGATCATGACTAATTCAAAATTCCCCGACTTATTCGCGGA
AGTATCTATGTCAATGACACACCTTGAGGTTGCATGTGGCTTGTTGCTTGATTGCTTTGATCTCCTATCCTCTATGACTT
ATCAAACTTATCTATCCTTCTATGTTGTTAGTTTCTGGTCTTTGAAGTTTATTGTAATCCTTTTAATGCTTGATAATCTT
GTAATCTTTGCTTTTATGGGATTGACTGAATGAAACACAAGGCTTATTTGATAAAAAAATAAAAATAAAAAAAAAACAAA
AAACAAAACGAAAACCAATTATATGAGAAAGATCGAACCAAACCGTATAATTGTACAATCTTGTGAATGTTCCATGAAGG
AAGCTGGTGTTCATGAATCATGATCCTAGAGAATATTTGCTTCGAATTCACTTTAGTAGTTAAAGCTACTTATGATTGAT
CCCAAAAAGCAAAAAAAGGGCCTGAACAAAGAACGACGTCGTTGACGTAGAGAAGATCTCGTGTAGTACATAAAGTTGGT
GTTTTGCTGCAGTACACACGAACACCGATCGTTAGTACATTACAAACACTTGGACTATTCTAAAATTTTTAACTAATAAT
TTTCTTAACAATGTTGTTTTTAAATTTTAATTACTATCACATGAAAACCAAAGAAAAATTTAGTTTCATTAGTTATAATT
TTGAATACGAAAAGAAACTCGGAACCTCAAAATATATATTCTAGTATGGTTTGTAAGTAGTACACAGTACAAACAACAAG
CATTGTACTGCTTCTAAACCAACACAAGCATTGCAATGTCAGCTACTCCTCAAGTATAAAATCATGTTTATGTTCATTTC
TAAGATGATAGAAAAAAGCATGAGGATATTTTTTCCTGGG