| Basic information from miRBase |
| hairpin accession number: MI0001003 |
| Located between position 16652101 and 16652233 on chromosome 2 strand + |
| mature miRNAs for MI0001003: |
| ath-miR393a (MIMAT0000934): TCCAAAGGGATCGCATTGATCC |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis" |
| [3]Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets" |
| [4]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [5]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TGTGTTTGCTTAGATGTGTCGAAAAAAGTTTTGTTTTTTTTAAATGTACGGAGATTGTTTCCCCAATTTCAATTTCTTTA
ATGCTTTTTTTGATTAAAATATGAAAATGGTATCACCAGGAAGAAGAAGTAGAATCTGACTACTTCAAAATGTTGACTTT
GATGATTTTAACGATGACCCTTTTGAAAAAATGTTTTCTTTAATGATCCTGGAACCATAAGATTGGGAAATTTTCTTGCT
TTGCCAAAACTCTGCTTTCTATAAACTGAGATCATGTTTTGGGAAGCTTATACTATGTTTTGTGGAATGTGCAGATTCAT
GGTTTCAGGTGGCGTTCGTTTTGACCACCGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATGGTTCCT
TTAGGTTGGATTGGTGGTGTGGTTGGTCTTCTTATTGCTACTGCAATCTCTCTTTATGCAAACACTCTAATAGCTAAGCT
TCATGAGTTTGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGGATTCATTTACGGTAAATAAAAGACCAAACCAG
CTCTCTTAATCTCTTCTCTGTTGTTACCTTCATTGGAATGATCTCTCTTTTTATCAGGTAGGAAGGCTTATCATCTTACA
TGGGGATTGCAATATGTTAATCTTTTCATGATTAATTGTGGATTCATTATCCTAGCTGGTTCCGCCTTAAAGGTAGTAAA
ACATTTTCTTCTCTTGATTCTTGATTTCGTTAGACGAGTTAGTTAATTTTGGTTGTGTGTTCTGTTTCTGCAGGCTGTTT
ATGTGCTTTTCAGGGATGATCATACCATGAAACTACCTCATTTTATAGCCATTGCTGGTTTGATTTGTGCGATTTTCGCT
ATTGGGATTCCTCATTTATCGGCTCTTGGGGTCTGGCTTGGAGTTTCGACCTTCCTCAGTCTCATCTATATTGTTGTGGC
AATCGTGCTATCGGTTAGAGATGGTATAACTAATCAAATGATCATCAAGATTCAACATTACTAATGAGTTTAACTACTGC
AAAAATCTAATTCTTGCTTTGTTTTGTTTGTTTCTAGGAGTAAAAACACCTTCAAGAGATTACGAGATACAAGGATCATC
ATTGAGCAAACTTTTTACCATCACAGGAGCAGCCGCAAATCTGGTTTTCGCATTCAACACCGGGATGCTTCCAGAAATTC
AGGTGACTTTTCCCTAGACTTCAAAGTTCAATTGTTTGTTTGTGTTTGCTTTTATGTATTAGTGTACCTTTTGTTCAAGT
AAAACCTGCATCTTAAACAAAGTTTGTTTGTTAATCATATTGACACTATAATTTCCACAATGTTAGGCAACAGTGAGGCA
ACCAGTTGTTAAAAACATGATGAAGGCTCTATACTTTCAATTCACAGCGGGTGTTTTACCGATGTACGCAGTTACATTCA
TCGGATATTGGGCTTATGGATCCTCAACCTCGACCTATCTACTAAACAGTGTTAATGGCCCACTCTGGGTCAAAGCCCTT
GCTAACGTCTCTGCTATCCTTCAATCTGTTATCTCTTTGCACGTAAGTTTCTTAGCGCCAAGTCTACGCTTTTTTAACAA
AGACTGTCGTCTCTAACTATATGTCTGACTCAATTCTTTGTTGTAGATATTTGCGAGTCCAACATATGAGTACATGGACA
CAAAGTATGGGATCAAAGGAAACCCATTTGCGATAAAGAACCTGCTGTTTAGGATCATGGCGAGAGGCGGGTACATAGCG
GTAAGCACGCTTATCTCAGCGCTGTTGCCGTTCCTCGGTGACTTCATGAGCCTAACTGGTGCAGTGAGCACATTCCCTCT
CACATTCATTCTAGCCAACCACATGTACTATAAGGCAAAGAACAATAAGCTGAATGCTATGCAAAAGCTATGGCATTGGC
TTAACGTTGTCTTCTTTAGTTTGATGTCTGTTGCTGCAGCCATTGCAGCTGTCAGACTCATCGCCGTTGATTCCAAAAAT
TTCCATGTTTTTGCAGATTTGTAATTCATTATATTATATAGTCAATTGTGTATCCTTTATTCTTAGGCAGGTTTATTTCT
CCTGTAAGCTTGTATTCTCTCTCTATTTGTCTTACCATTAGAGCCTAAATAAATAAATCAAGTTCTAAAATCTAAAAAGC
ATATAAAAGACCACTTTCATCATAATCATTCTGAAAATTTACCAACAAAGAATACTAAGTTGCATGATTAAAGTCTCTAT
TAGAAATGTAAATCATAGTATTAGAGAAGAACATAAAAACACCTAACTTAAAAAAACCTTAATTTAGTGAGATAGAGAAG
AGAAGAAACAGAATTGTTGTTGGTTTAACAAAAACCTAATCTTTCAATGATTAGCTGTTTAATTTGAAATTATAACAATA
ATTTAGACAGGCCAAAGTGGAACCCCACTGTCTCCACCAAAGCTCTAGATAAAAAAAAAAAAACGAAAGCGTTAGATATT
TTTTATCAATCGTGCTCCGTAATCATTACCTTTCTTCTTCATCTTCATCTTCACGCAGCGACTTCTTTGATTCTCTCTTT
TTATTCTCAGCTCCAATTTCAACCTGCATTTCTCTCTTCTCAATTTTGGGTTTCTTTTTTTGATATCTCATTTGATCAGA
TCGACGAAGAGGTAACCATTTTGCCGTTTGTTAGTTCTTAACGATTTTATTCTGTTAAAAATCAGATTTTTTTTTGCAAT
GCTTGTAGAAAAAGATTCGATTTTTGTGTACTGATTGAATCAAAATATGTGGTTATGGATCCATGGATTGATTTGTTTGA
ACTGATGCAAATGGCTAATGTGAAAAGTCAAGAATGTGTTAATGTAGTTTTTTTTGTTAAACCTCTTTGTGTTGTTGGGT
TTTGAAATGTTGTTGTTACAGAGGAAGAAGGTTTGAGCTGAGAGATCTTTGGAGGTAGAAAGAAGATCTCAAAAACGATG
TCGTTTACAGGAACTCAGCAGAAATGCAGGGCGTGCGAGA