| Basic information from miRBase |
| hairpin accession number: MI0001004 |
| Located between position 20691647 and 20691806 on chromosome 3 strand + |
| mature miRNAs for MI0001004: |
| ath-miR393b (MIMAT0000935): TCCAAAGGGATCGCATTGATCC |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis" |
| [3]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [4]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TGAACACCACTGATTCTGTAACTTGAGATTTAAGATTAGTTGTTTCATTTTTCTTCTCTAATGGCGAAACCTTGTCAACA
AGGCTATATCTATTTGAAAGGTTGTGCATTGTAGTTAAGAGCAATTAGATTATAATCCTTTAAGTATAATAGATTGTCCA
AGATTTATATACTTAAGTGAACATGGATCCTGATTCGATTTCCTAATGCAGGAGGCTAGATTTCAACAAGTATCGGAAGG
AATCGCCATTATCATTTCTCAGGAGCTGTAGTTTTATCTATTCACTTTTATTCTAGACTCTCTGTTGGTTTTGATTTTAT
CTTGAGACGAAGTAAAACATTTTTTTTCTTGAGATCATATACTATCGAGTATTAATGGAACTTGAGAAAAGCTATGATCC
CAGTCATTTTCCTTATTTAGATTTCTCTTACTCTATTCCCTTAACCTTTTCTCCAATTTGAGTGTTGATGAAAGAAATCA
TTTCTCCTTCATGCTATAACTAGCAAGTAGCCAATGTAGACTTTTTCTTGCAACTAAATCAATTTATTCTTGGAATATTA
ATTCTAGTTGGTATATTAAGTAACTTCGTTATACTGATTCCATTTATTAATGATTAATATGATGCAAAAAGTTACAATTT
ACACAGTTAATCAATCAAATAAACCATTTATTTGGCACCACCCGCCAAAAAAAAAAGAAGTACCAGATATTTGGTGCCGA
CATAAGAAAAAAAAAGAGAGCCAAAGTACACAAGTTACAATCCCACACTCACTGTGTCCTTAAACACAATCCTCGAGATT
CTATTCCTTGCTTGCATCATTTTCTTCTTCCGTGTATTTTGGAGTTTCGTTCGAGGACAGATCTTGATTTGACTCAGCTC
AACTTGAGGTAACAAAAATCTTTCCTTTGTGATTAATTTTCCTACGATCTCACAAAGGTTTCGCCTTTCTCTTTGATTAC
AAGTTTTTAAAACTGATTCTTCCTTGTAATTGGAATTGCAAGCGAAGAAGAAGAAGAAACAAATGGCTTTGCGTTTAGGT
GTTTCTATAGGGGCAGCTTTGGGTTCCTCTCATTGGGACGACGGACAACGAGTACGACAACGTGACTTCTCCGCTTCTGT
GAATTTCACCGCACCGGTTACGAGCCGGAGGAGCTTAAGGGGTAGTAGAACCGGTGTGAGGATTCTTAGGGTTTCAAATG
AAGGACGCGAATCGTACCTCGATATGTGGAAGAACGCTGTTGATCGCGAGAAGAAAGAGAAGGCCTTTGAAAAAATTGCA
GAGAATGTTGTAGCTGTTGATGGTGAGAAGGAGAAAGGAGGAGACTTGGAGAAGAAGAGCGATGAGTTTCAGAAGATCCT
CGAGGTTTCCGTTGAGGAAAGAGATCGGATTCAGCGAATGCAGGTCGTTGATCGTGCCGCTGCCGCAATCTCCGCAGCTA
GAGCTATTCTCGCCTCTAACAATTCCGGCGACGGCAAAGAAGGATTCCCAAATGAAGACAACACTGTCACAAGTGAAGTC
ACAGAGACACCGAAAAATGCTAAACTTGGTACAAATCTTCTACTTGTTAGCACAATCCAAAGTTAATGATAGTATTAGTC
ACCTTACTTGGCTATGTTATTGGAAATTTTATTAGGAATGTGGAGCAGAACAGTGTATGTGCCACGGTCAGAAACTTCAG
GGACTGAGACACCAGGACCAGATTTTTGGTCATGGACACCTCCTCAAGGTAGTGAAATTAGTTCTGTGGACTTGCAGGCT
GTGGAAAAGCCTGCTGAGTTTCCAACTTTGCCAAATCCTGTATTGGAGAAAGATAAATCAGCGGATTCTCTTTCGATACC
ATATGAGAGTATGCTTTCTTCTGAAAGACATAGCTTTACTATCCCGCCTTTTGAGTCTTTGATTGAGGTTCGAAAAGAGG
CTGAGACGAAGCCTAGCTCCGAGACTTTATCGACAGAACATGACCTTGATCTCATATCTTCAGCAAACGCGGAAGAAGTA
GCTCGTGTTCTTGATAGTTTGGATGAATCTTCAACGCATGGAGTTAGCGAAGATGGATTGAAGTGGTGGAAGCAAACGGG
TGTGGAGAAAAGACCTGATGGTGTGGTTTGCAGGTGGACAATGATACGTGGGGTTACTGCTGATGGTGTTGTTGAGTGGC
AAGATAAGTATTGGGAGGCTTCTGATGATTTTGGGTTCAAGGAACTTGGTTCTGAGAAATCAGGACGTGATGCCACTGGA
AACGTGTGGCGTGAGTTCTGGAGAGAGTCAATGAGCCAGGTTAGTGTAAAGTAGTTGCCGTAGTAAATCTAACGCACTAT
AGACTATTTGAGACTTAATTTGAATTGTCTATTACAGGAGAATGGTGTTGTGCATATGGAGAAAACTGCAGACAAATGGG
GAAAGAGTGGACAAGGTGATGAATGGCAAGAGAAATGGTGGGAGCATTACGATGCTACCGGAAAATCAGAAAAATGGGCT
CATAAGTGGTGCAGCATTGACCGCAACACGCCTCTTGACGCTGGCCACGCTCATGTCTGGCACGAGAGGTATTCTCAAAA
TCCTCTTTTCACATAACGAAACACTAATAACATAATCGAATCTTTATCCTTTAACTTTCAGTCCTTAAAATATCAATCAA
TCTCTTTAACACAAGTTAGAATGTTTGTCCTTTAACTTTTACACCTTATATTGTTGAACATCAAATCAGTTCAGTAGCAA
AACATTGCCTTTTCATACTCTTTAAGGTGCTCTATTAACATTTAGAAGCTTAGTCTGCGAGCTTTGTTGAACTGTTATCA
AAACAGAACTGACACTAGACAAGCTGTGACCAAATAACAGGGAATGTAGAGTGTTTCTAAATATGTCTTGATTGGTTTTG
ACCAGGTGGGGAGAGAAGTATGACGGGCAAGGCGGAAGCACAAAGTACACAGACAAGTGGGCGGAACGGTGGGTAGGTGA
CGGTTGGGACAAATGGGGAGACAAATGGGACGAGAACTTT