Basic information from miRBase |
hairpin accession number: MI0007040 |
Located between position 6339575 and 6339704 on chromosome scaffold_12 strand - |
mature miRNAs for MI0007040: |
ptc-miR1445 (MIMAT0006002): TCCCTTGTAGACTAGAAAAA |
References |
[1]Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus" |
>promoter (3kb upstream pre-miRNA, by PMRD):
CAGTTTTACGTTATTGACTATAACTCCAAATCCAACCGTTAGATCGAGCTGAAACTTTACCAGAAGATTTCAGAGGTATT
TTTCTATCTTGGGGTATATTGTCAAGTGAATCAGAGTTCAGAAAGCACTTGTGATATAAATCAGAACAGGTTGTACAAAT
TTTTTTTATTAACTTCCTTTTGACTTGTGGACTTCCTATTTCGCAAGGATCTTTTTTCTAAAAGGATGTGACACCTTGTT
TTGGGAATTTTCAAGTTCCACAAGAATCTTTAATGAGATGAAACATAATTTCCAAGAGTGGCAACGATTCATTAATCTTC
CATAATCCTTTTCTTATAAGGATTCCTTATTCATCCTAGCTATACAAGGAAAGAAGGGCTTGTGCTATTTAATGACAGAT
TAGTTATTTTTATTATTTTCTTTCATGTTTGGGCTTAATTAAAATTAAAAATTTGTTTGGAGCTAGGATCCAAGGCTTGT
TTGAATCAGTTTAGGGTTTTTTGGTCAGTTTTGAGTGGATCTCATATAAGTCCACATAAGGGAACCATTAGGGTTAAATT
TTTAAAGAACTATTTAAACTCATTTAACCAAAATTTCAGGTGCCATTGACGAATATTACTTCTGAATTTTTCAGTTTTAA
TGTGTGAGTAATTCTTGCATTCTTCAATTCTTGAACGAATTGAATCTAACTTATCGAAGATTAACTGGTTTCATGGCGTC
ATTCTACTCATTCCAATAGTGTTGATGCCTTGGGGCAGGTTTCTATTGTGTTGCCTATCAGACCTATTTTGGCTTTTCGG
GATCAAATCCCAATCTTGAGTTGTGGGTTGCATGACCACGTGATCACAAGATTCACATCAGAAGTAGATAAATTTCCGAA
CCACACCACGAAACCCGAGAATCTTTCTCTTGCTCCATGAACAGTTTCCCGACCAAGGAATCTCCCAAAAACTCCTACCA
TGCAACAAATAAAAAGATATCCATGAAGACCATATAGATTTGGCCGGATTACAACTAGACCATAAGTGTTTAACCATTGC
TGCCCCAGTTCCACACTTCAAGATTTTTGATACCCATACACCTTTCCTTCTTAGGCAAACAGATAGTATCCCAAGCAACT
TTTGCATTACCATAAGAAAGATCGCTACCCTTACATAGGAAAGACCTCAATAATGAGGTTATTTTCTCAATAATAACCCT
AGAAACATTAAAAAGATAAGACCAATACACCTGAATAGAGAAGAGAATGAAGTTGAGAAGTTGAAAAGTCTACCCGCATA
AGAAAGATGGTGGTTCATCCAACTCCTAGCTTTAGCCATGATTCGGTCCACAAGAATTAAACAATCATAGGAAGAAAACT
TTGAAGTAATAAGAGGAACACCAAGATACCTAACCGGAAGTTTTCCTTCCATGTAGCCAAGAATACCAAGAAGCTGCATT
TTTGTATTAGGATCAACACCACACAAGAACATACTAATCTACTCAGGGTTTGGTGATAAACCTGAAGCAACCTAAAATTG
ATCAAGACAATTCCTAACCTAAGAAACCAAGGCCACCTCCGCTTTACAAAAAATATCATCAAATCATCAGTGATGCATAA
ATGAGTAATTACCTCCCTCTCACAACGCCAATGAAACCTGAAATAAGTATGTCCATTTGACCCAATATACCCGAGAGAAC
TtccataacaagaacaaacaggtagggtaatagtggatcaccctatcttaaacctctagATCCAACAAAgaatggcatga
cattgtgtggttcaagaatgctgttccaagacattcatttcttctatggatggctgtccaacagaaactcacaactcaag
ataaacttcatcggtttggtatacatggtcccaatagatgctcactctgtctccgcaacaatgaggatcacaaccacttg
ttctttgaatgctcctatactaaagcgatctggtgggatgtttgtgacagatgcgacattccaagaatgacaaaagactg
ggatgaatggattcgatgggccactgtctcttggcatggcaagagtttcgtcaatttttctcgtaaactgagttttgcag
ctacagtgtatcatgtatggcaagaacggaatgcaaggatctttgctggaatgtctagaactccgaatttggtccttaat
caaatcgaatgtatcattcgtgataagcttgatttgatgaggaatgtcataccaacaaatgaaaacacaaggatccaacg
agcttggagggtgaataccatagattctcaatatgttagttagctggttgtattggttttcctaacgaatctagtgaggt
ttcagttttacggtcggtggctagcctgtagccatctgttgttttatgtttctgttatcattgtaaatctggggtttgcc
ccttataatgtttgtatcttcttcttttaatacatacgtcaacttaccAAAAAAAAAATAGATCCAACAAAGAAACTGTG
AAGTTCTCTGTTGATCGAGACTGGGAATTTAGTAGTAGAGATACATTATAATGCGAACCTCTTGAACACGCGGTTAAGTA
ACCCACACGCAAAGATACCAATTTCCAGAAAACCAAGTAAATCAGGTTTGATAGGAGTGTGACACAAAGATAACTTGTAC
CTAGGCACCAGCACTATTGGAAACGAAAATCCCCACCAAACGAATATTGATTCGCGAACGAAAAGTATAAGGATGACGCC
ACGAAGTCAGTTGTTCTTCGATAAGTTATTTTTCAGTTCTTTAAAGAACCAAGGAAGGGAGATTATCCCACCAACACCCA
ACAAGTACGACAAAAGAAGTTTATTGATCTGAAAATTGAGTACCCTTACATGTCTAGTTATGCCCTTATTTATATTGACT
TCAAACTAAAATAAACCCTAATGAATATATGATACCCACTTACAATTAAACCCAAACACAAAGAAATAAAAATAACATAA
AGTCTGGTGTTGATTTGCCGCATATAACTTGAGAAAATAA