| Basic information from miRBase |
| hairpin accession number: MI0000195 |
| Located between position 7740598 and 7740708 on chromosome 5 strand - |
| mature miRNAs for MI0000195: |
| ath-miR162b (MIMAT0000183): TCGATAAACCTCTGCATCCAG |
| You can find this miRNA in EMBL: (accession: AJ493637) |
| References |
| [1]Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants" |
| [2]Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP, Cell. 110:513-520(2002)., "Prediction of plant microRNA targets" |
| [3]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [4]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [5]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
>promoter (3kb upstream pre-miRNA, by PMRD):
GAACTAGGGTTCGAGGTGCCAATGGAAGAAGAGATCAAGTCCAGAAGCAAACCCGAAGATTCTTCTGATAAAAGACTTGA
TCGACCCGGATTGAAAGAGAAAGTGGAGGAGAAGACAAGCAGCCTCACACTTGGGTCTGAAGAAGAAAAGAGTAGAAAAA
AGAGAGAGAAATCGCCAGGAAAACGGAGTGGTGGCAACGATCTATCATCGAGTGAATCCTCAGGAGATGAACGGAGGAGA
AAACGATATAATAAGAAGGATAGACATAGAAACGATTCAGAGAGCGATTCATCCAGCGACTACCACAGCAGGGATAAGCA
AGGATCAAGATCTAGGAGCAAGCGGAGAGAATCTTCTAGAGAGAAGAGAAGTAGCCACAAGAAGCACTCAAAGCATCGCA
GGACCAAGAAGTCTTCTTCTTCACGGTATAGCTCAGACGAAGAACAAAAAGAGTCAAGGCGGGAGAAGAAGAGGCGACGA
GACTGAAACTTAATCAAAGCTGTTGACTGACTAAAACTGGAGAGAAATCAGAGCACTTGCATAGATTTTTGTGTGAACAT
TGAAATAACGTAGTTTTGGGGTATGCCATGAATGATGCTCTGCACTGTCTCGAGATGGTCAGGTTAGATAGCAAATGATG
AGCTTGTTGTTGGGTTCATTGCTTCGTCTGAGGTAGAGAGATACTGTCATGTCCTTCATTTATATATTGGTAACAAATTA
GATTATGCGTTTGAAATTTTTTCGATATAAGGGTTTCTACAAGAAATTCACAAATAAGAGTGTTATCTTAAAATCATTGA
TTAAATAGTACATAATTATGTTTAAAATTCCAAATATCTCAAAGCTAATAAACCAAATATCTAAACACTCTCAAATCCTA
CAAACTAAAGTGAACTTGCTACAACACTATGATTATTGCTTGAATCCAAAACGGCACGAGCGGTTTCCAAAACGTTTTGA
CCGCAAACGTAATGACTCCTACACACAGGCATATAAACTTCAGCACCACCGATCAACTCCGTCTCTTTCTCCTCCGTCTT
CCTCATCGTAAACAAAGCTCTCTTCCCACAAACCTCACACCGTGACGTCAGCTTCGTAACCGTATCCGCAATCGGAATCA
AATCAAGAACCGAACCAAACCTCCTCCTCATAAAATCACCATCCAATCCAGCAACAATTACAGTTTTACCCTCTTTATCA
GCAGCTTCACGGCAAAACTCGTAAAGATCTCCGAAGAATTGAGCTTCGTCGATTCCAATCACATCTAATCGATTCTCGTA
GTCGTCGAATCCGAATCTCTCTTTGAAGGACGAGAGATCGGGGAGTGACCAGCAAGGGTATTTCTCACCGTCGTGAGTAA
CTATTGATTCGGTGCAGTATCTTGTGTCTTTGTTGGATTTGATGATTGCGATTCTTTTACCGGTTTCTCTTTCGGCGAGT
ATACGGCGGAGAAGTGTTGTTGTTTTACCGGAGAACATTGGACCGACTACGACGTGGATTTCGCCGGGAGATGAGGAGGA
GAGCGGCTGAGATGATGATGATGATGTTACCCTCGTCGCTTTCGTTTGTAGCTTTCTGGTGGAAATGGTGGAAGGAGGTG
AATTTGTGGGGGTTATGTTGTTGATTGAGAAGGAGAAGCGAAGAGCGGTGGAGAAGAGAGAGGGTTTATGGAGATGAAGA
GAGAAGGGAGCAAGAGATGGTGAGATTAATGTTCTCATCGAAACACCAAACATTTGATAATTACAGAGGAATGGAGGAGG
AGGAAGAAGAAGAAGCCGCAAGGAATTAGGGTTTATTGGGAAAAGGGGTCTATTGGAACGACTCTTTGAATTTTTTTGTA
TTAATGGGTAGCTAGTTTTGGAGTGATTTTTGAACAGATTTCTTTACATATTATTTTAAAAATAAATATTTTGATTATCA
ATTCAAGCTAGTTTCATGACAAAGAAATAGTATTAGATCGAAATTTTTATTATAATTTTTTTTTTTATAGTGTTTCGATG
AGAACATTAATCTCACTATCTTGAATGTGATGAGATTAAATCATTCAAGCTGTTTTTTTTGGTGCTTCAATGTGATGAGT
AATCTTGTTATTATAATTTTTTTTTGATGTTTTGTTCGATGATTCTTATTTTTATTGTTATGAATACTTTTACCGTAATA
TTTAACTTATTTTTTTCTTTAGTGATGAAAATTGCACTAATATATAATTTACTGTTAAATCTTGTTTCTTCGTACTTTTT
TTAGAAAATGACTCACATATCTGTTTATGTAATAATTTTTGTGGTATAGTCTTGTATAACTTTAACATTAATTCTAACTT
CCATATAATAGAATGATTTTTAGAAGGAAAAAGATATATATGATTTATTGTTATTTATTTGACAAAAAGTCTTGTTTTTT
TTTTTGTTTTTTTTTGTTTTTAGCTTATGGTTAAAGAGTTAGGTTTTGGTAAAGTCTATTGTTTATCTTTTGTAATGCGT
AGGTAAATTTTGGTGATATTTGATAAATTTTAACAAAAAAAGTGAAAATTATAGAGTTGATAAATTTTGGTGATATTTGA
TAAATTTTAACAAAAAGAAGTGAAAATTATATAAAAATGAAAAGAAGTAGAAAAGAAGAGAAAAACTAGAGTGAGAATCA
TTAGACTGTCAATCATAGAGTTGGATTTTTTATTGACCAAAAAGTACAAAAGACGAGGATGAGAGAAAATTATGTAATGT
ACGGTAAAACGGTGAGTCATCAGATTCCTCTTTTTCAAATTTCATTGATTCCAATTGAAAAATCTCCTCTCCTTCCACTT
ATTTCTCACATGCATTCTCTCTATATATATGAGCAGCTCCTAGTTTTATAACTCTGCATCTATCCACCTCTCTCTGTAAA
TTTATCTAAATGTTTCTTTTAATCTTTTTGAGATTAATAATGATTTGTGTTTGTTCATCAACCGATTTTCTCAGATCTGT
CAATTATTTTTGTTTATTTATTTATGATTTATGAATGAGG