| Basic information from miRBase |
| hairpin accession number: MI0002209 |
| Located between position 5079325 and 5079431 on chromosome scaffold_12 strand + |
| mature miRNAs for MI0002209: |
| ptc-miR162a (MIMAT0001915): TCGATAAACCTCTGCATCCAG |
| References |
| [1]Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" |
| [2]Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants" |
| [3]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" |
>promoter (3kb upstream pre-miRNA, by PMRD):
taacagattgcttttcaactcaggaatgtaatagacctcagaaattacctgagtaattccattcacttgcattcaaaggt
ttttttccccacaactgccatctttgagttgttgcctagtttcatagtttgcctgaattaaacatccaaatccgagaacc
attctttattctcactcatatgattactacatcctgaatcaaagaaccagacctctattctcttagcatggttaagctct
acataggatattaataacaactcttctctttcatctatttctgtataattggctccattctcccaactaggacactcata
ctgaaagtgtcctagtttatgacacttaaaacattcgataatggctttgttgaaaggttgtctgtcacgacctcttcctc
ttcctctttctctaaacacccctcgatctcttcctctaCTAGTGTTATCTTCATGAGTGATCTTGAGAGCCTGCTCTTCT
TCTTGATGAACATTCATTCTTTGTTCATGGACTAGCAAACTGCTCTGCAGCTCGTCAATGGTTAGTGTGTTTAAATAACT
GGATTCTTTAATGGAGCAAACCACATAATCAAATTTTAAAGTCATAGACCTCAAAAGTTTTTTATTGATGATGGTTGGGC
TCATTGTCTCATAATGAGTCTTTATTTTGTTGGCTATAATGAGAGTGCGAGAAAAGAAATTATCAATAGTTTCGCCCTTC
TTCATGTGTTGAGTCTCAAAATCCCTCTAAAGTGCTTGTAACTGTGCTCTTTTCACTTTGGTAGAGCCTTGGTATTTCTG
TCTCATGGAGTCCCAAATACTGTTTGATGTGTCTCTATTGAGTATAGTCTCCATGATATTCTGATCTATAGCTTGAAAGA
GATAATTCTTTACCTTTAAGTCCTCTGCCCCTCAATCAATTTGCGTTGTGCTTTTGCCTAGTCCTTGATTAATTTGTGAT
GTCCTTTTGTTACCACCACCAAAATCccattctttataagatcccaatattctttggagtgaagaaagttctccatcaac
atcatccaatgatcgtaatgtccgtcaaatttgggaatggtcGGCTGCACAAAACCATTGCTATTGCTTTCTGCCATTCT
GTTTGATTTCCTATTTCTGAAAGAGAAACTACAGTTTCTTTCAACACACACACACTCACACTCAAGCCTCCTGTAATGAG
GCTTTGATACCAATTGTTGAAAAACACTCAGAAGAAACTATAACAAACAATCTTGAATAAGTAGTCCCTTGTATATTCAT
CACAGAACAACAGGCTTATATAGCCTTTTACAAAGAGATGCAGGAATCAAATAACAACCCACGATTTACATACCCTAAAC
GTGGTAACAGACTAAGAGGAATTGTTAAAAACAGAAAACAACTAGTCCCATAATAATAGGACTTACTAACAAAATGGTAA
AACAGAAAATAACTCATCCGAAAAAGCAGGACTTGTTAAACAGATTGGAATAATAAACTGTTAACCTCTAAACAGTTTAT
CGTTTATGTGGATAGTTGGTCACTTAGAGATATCGAGAGAAGTTTTCAATAATTTCTGTTGGTTCAACATGAGACATCTT
TGGTTGATTTTAAACGAAGAGTAGAACAACCCAGATAAGACGGTATGGGTGAAAAAACATCAAACACTCCCATAGAGTAA
TTTTTAAGGGTGAGCAAAAAAACCGAAACTGATTAAACCGAGAAAACCGATAAAAAAATAACAAAAAAAACCGAACCGTG
AAAAAAACCAATTAGAATTTAAAAAAAACTGACCGGTTCGATTTGGGTTTGATTTTATAAGTCTGAAACCAAAAAAACCA
AACCGAACCCAAACCGAAAAAAACTGGAAAAAAACCGAGCCAAACCGGAAAAAACCGAGCCAAACCGAAATAACCGAGCC
AAATCTAAAAAACCAAGCCAGACCGGTTTGAACGACTTTGTTATAAAAAAACCAAACCGAACCAAAATCGGTCGGTTTGA
ACCGATTTTGTTTTTTTTTTTAAATTTCAGTTTGGTTACTTTTTTTTGATAAAAACCGAATCGAACCGAAAATAATCATT
CCTGGTAATTTTTTATGCTTAACGTTTAACTCGTTAAGTACTGTTCCCGAGTCATGAGGTTGAAATAATATAATAAAAGT
AAACAAAACAAATCATGAAATCTAATTCTCAATCAATCTAATATTAAAAAATAAAATTGATAAAAAAAAAGTTAATTAAG
AGAAAAAAACTTGAATTAACCAGGTTAACACGCCAAACTGAGTCAACACATTAAATTCACAATTAATAACTTAATATAAA
AAAATTTGTAATATTAAAAATTAAAATAAAAACATTAATTAAAAAAAAAACAAAAAAAAAATTCAAATAGTGCTTTGTGA
GGAACAAACGAGTAAAATTCCCTTCTCTTATTATTTATAATATAATTAGCCCATGCCACTTGGAAGCTACATAAGTACGT
AGGCACGCTGCATTATTAGCCGGGCCACAAACACGGGTACAAGACGAAGCCACCTGGCAAGAAATCATTAACTAGGCGAA
ACGTGTCAGTCTTCGATTGTTAGAAAAAGTAAGGTTAAGAAAGTAACTTAACAAATCACACGCGATATTTATTATAAACA
CAAAAGTGGCTCGCTGCGTGTCTGTGTCTGGTTCATGAAGAATCATAAAAAAACAGAAGCAGAGAGAGAAAATAACGTAC
GGCAATGGTGACTTTTCCTTCCAGATTCCTGCTTCGATCAAAGGGAAGCCCCCTCCTCTCTCTCCCTGCACAAATATATA
TATATATATATATATATATATATATTTTTATTGAGATTTCTCTCCTCCCAATCTATATAAAAAACAAAAACATACATGCA
TTGAATTTTGAATTTAATTTATAGATCTGTGGTAGCAGTTTTGTGGAAAAGAAAAGGAGAATAGGATGAAGAAAAGGAGA
AAAAGAGAAAGGTTTTAGAGATTGCTAAATTTGTGGTGGT