| Basic information from miRBase |
| hairpin accession number: MI0000204 |
| Located between position 2840622 and 2840734 on chromosome 5 strand + |
| mature miRNAs for MI0000204: |
| ath-miR166d (MIMAT0000192): TCGGACCAGGCTTCATTCCCC |
| You can find this miRNA in EMBL: (accession: AJ493646) |
| References |
| [1]Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants" |
| [2]Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP, Cell. 110:513-520(2002)., "Prediction of plant microRNA targets" |
| [3]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [4]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [5]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [6]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
GATCACTCAAGGCAGAGCAAACGGCAGGTGTCCACTGAGAATCCAAGTTTCCGAGCCCTAATCTGCCGTAATCTCCACTT
CCCCACATCGCCGCAAATCGTTTCCCGCTCTCGCTCGATACCCATCTGCTACAGCAAACACCAATCGGACCCAATTTCGA
ATCTTTTAAAAGCCCACTCGTACAATTCGATCCCTGAATCCTCGACACAGGAATTCGAACTCGTCCGATGGCTCTAGTCA
ACATTTTCACTTGTAGAAATCAAAAGAAAATGTGATTAAAGGAGATCAATTTAGATAGTTAAAATGGATGGATTCTTCTT
CTTCTTCTTCTCCGTTTGAAAAGAGACTAGATTTTTCATGGAGAGATTGAACTCGTAAATGGAATCACATGATGATCAAC
AACAAGGAAGAAGAAACTGATGGATAGCAAGAATGCTACGTCTTCCCGTTATTGAAAGTCTCTAGAATGACAAGATTTTT
CGAAATCGGTCCTTTCCAGTTCTTTTTTCTATTTGTCAAATTCGCCTTTTAAGTTTGTTTTGTACAATTTCACACCCAAA
TCAGACAATTGGTTTTGTGAATCTGTTTTCTTTTGGCTTAATTATGATCACTCATAGGAAAATATATATATGTTCGTCGT
ATCAAATAGTGTGATCATACTACTTGATAGTCTCACATTAACTCAATATTTACACTTTGAATATATAAATACATACATGA
TGAGTTTACTAACACTTGGATGTATATGCTGAACAATTAAGATGCATCTTTGTCTTCTCTTATTTTGGCTAAGGATATAT
TTTAAATGAATAAATCTTGAGGTTGTGGTCATTTGTGCCTCTATATATACAAGACATAGGTTTATTTTGTCTCACACATA
CCTTTCTTTCTCTTCTTCTTCTTACGAAAAGTTTCATCACATTCACATTATCTTTAACTTTGGTCTCTTTTCTTTTTTGT
CTCTTTTCTCTTCTTGATAACGTGGTTCTAGTCTTGATTAATTCATTGTTGTGCGATTTAGTGTTGAGAGGATTGTTGTC
TGGCTCGAGGTCATGAAGAAGAGAATCACTCGAATTAATTTGGAAGAACAAATTAAGAAAACCCTAGATGATTCTCGGAC
CAGGCTTCATTCCCCCTAACCTACTTATCGCTTTTCGCCCACTTTCTTTCTTTAGTCTTTTTTGTCTTAGTTTCATATTT
GTTCTATCTTGCGACCGAGGTAAATTTTGATCTTGTTATTAGATTAATTACTCTACATGACACACAAAACTGTTGTCTAT
ATGTTTCTATATATAGCTTTTTGGTTTTGTTTAGTTATCATATTATAGAGCTCTTACATATATGAAAGTATAAATAGAGA
CTTTGAGAAACTGAGAAAATTAGAGGTATTCAAAGATTGAATGATATTTTTCTTTCATATGTACCCTTTTCTTTTTGGGG
TTTATGGATGCTTTTCTTCAATATATTTCAACCAGTATCTTTCACGTCACAATTCACATCTTAACGTTCTCTCTCTCTCC
CTCTCCGTCACGAGTCACGATCTCTGAAAATTGGTTTCTGTAATAATCTAAAATACAGGAAGAAGATTGTTTCTAATTAC
GTGTAATTTCATTTCATATTGAAGACAACGACGAGACTTAAATTTTCTTAAAACCGTCACTGTCAAATATCTTTTACGTG
CCTTTTATTTGCTCTTCGCTTTATCCTTCTTCTTTTTATGTGGTCTTCTCATTTTTTTCCAACGTCTGTCTATCTCACTT
TGTTGTCCATCTATAGCTAATTAGCCTTGTTTTTCCAACGTTCTATAAATTATAACGTTACTATATACTCTATGCAATTA
AAGCTCCTTTGAGTATGTGATTAAACTTAATTTTATATAAAAATAAATAGAAACTTAATATGTACAAGAAAAAATCGTTT
TAAAGTAAACTTACCTCTTGATAAAAAAGAAAAAGAAAAAGAAAAATAGAAGTAAACTTACCTCTAACTAAACTTAGTTG
AGCAAAACTTTCCCATAGCTTAACCTAAGTTTTCAAAAAATTATAAACATTAATTTAAAATAAGCAAATCTAATATATTC
CTAATGTCACTATATAATATACCAGAAGGTTAGCTAAAGGAATAAAGGATGATAATGTTAAATTTTAATCAGTTTTCAAA
GATTGAATTAGTTCATCTTTTTTTTTTAAAACATATCAAAATAATTAGTAAAATAATAATAAAACCCCAAATGGTATGTT
GACCAATAATAAAGACAAAAAGTGTTTTATAGTTGAATTTTAAAATAGTCTTGTATAGTTGCATATAAATTAAAAAAGCG
ATCTAGTATAGGAAAAATTTGGACGTACCGAGGTAAAGACCAAAACAATGTTTTGTCATTTTCACAACAATCAATGCATA
TGTTCGTGAAGTCGTCACGAACCACCTATATAAGCCAATGCATCCATATATATAAAGATATAACACACATATAGATATAG
TACAAGTTAAATGAAAAATATTTTGATTGTACAATTAGAATTCTGATTATACTTTAGAATAAAAAGAACAGAAAAAAGTA
GAAGTTCATTGAGAGAGATCCAAAAGAAATAATAAGGCAATAATGAGATAGAAACCATGGTACTTGTCTCCAATTAACTA
CTGTTGACCTCGGAAAAGAAGGAAATTGAAGAAACAACTAAAGACAAATGAAGATATATACATGGAGGAAAAGTTTGAAT
GTACATATGGAGTATGTTTTACTTTTATCTTTACAACTCCGGATTTCACTGTAAACTTCTATATAAGGCAACCCCTACAC
ACACTATATTAAGACAGTTACCAAAACCCCAAAATTTTACTAAATTAATGTAAGAGAAGTAAATATGAATTTTTTTGTCT
TGTGGTCATTTGCTCCTCTCTCCTATGTATAAATATTCGCCTCACACATAGACCTATTTAGCTTCTTCTTCTTCTTCTTC
TTCTGTCTACTTACATAAAGTTATCCTGCTTTGGTTTAGG