miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0002228
Located between position 7412220 and 7412362 on chromosome scaffold_14 strand +
mature miRNAs for MI0002228:
         ptc-miR166k (MIMAT0001934): TCGGACCAGGCTTCATTCCCC

References
[1]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




>promoter (3kb upstream pre-miRNA, by PMRD):
GGGTTTTATTAGTAGGTAGTATTTTGATTGATAAATTAATAATTATTGTATGATCGAAAGGGTGGAGTCGACAACCTGGG
TTGGAGATGCAGGATTTGACATTTACGTGTTGTTTCTATCGAACACACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCATATATATATATGAGAGGAGAGAGAGAGAGGAGAGAGAGAGACACACACACACACACAATTTTCAAGAC
TGTGAAAGCGTTGAAATATGTAGCCAGTATCGTCCTCTCCGTTTGTCACTCTGATGTACAGTATTTGGAAAGATAGAGAA
GCATGGACCAGATGGTGGTGGAGCCTTTGGTTGTGTTATAGAGGTGATAGCATGGCAGCACTTCTTACGGGCACCTTCCG
ACCCAACCTCACATGAAAAAAAAAATCCCTGAATCTGGCAGTACAGGTACTTACTAATCATTCCATAATCGTTAAGGTTA
ATTAATTGCGATTAATAATGTCTTTAATCAAATGGTCACGGACCATTGTATCAAAAACCTGATGAAAACAAGTGCCCGCA
ACCCTGCCTTACCACGCTTCAAGGCAGCTGTGAGGAGTAAAGCACCATAATTTTAAAAAGAAAACAGCTAGCATTTCGAG
TTAATTATATTTTAAAAAGAAGAATGTGACTCTGATTCTTCCACGCCATGGCTTAATTATACTATTTTCATTGACATAAT
TATGTAAGTGTCAAATGTCAAGAATCCCACTGCTTGATTTACCGATTGAAAGTCTTGTCTGATAGAATGCTAATTAATCT
GTTTGTGTTGTGAAACACGCGGAAAATTTACATGCAGTAGCCTAAAAAATCTTCATTTGACTATTAACAGTACTGGATCC
AATTTTTTTGTCATTGAAAAAATTGATAAGAGACGGACATTTAGGTAAGGCATCTTTCAATGTTGCCGATTTAACATATA
CTGGCAATTTATTACTGCAACTACGACTACCATGCATAGTACACATGGTGATTTGTGACCAAATAAGCAATTAATTAGAA
CCTCACGATCCATTCCACTAATAATTTCAAACGAGGCGAGAGGCACATCGAAGAGAGAGAGGAGAGAATGGACCCAAGGA
TTTTTAAGGCGATGTGTATAGGAAGATGATGGTTGTGCCAAGTCTCTATCGGGACACCGAGAAAGTAGATGACAGTTTTT
AATAAGCCAAATAAATCTTTATCTCAAGGTCACCATTTGTTTCCTTCCGTCAACAACAATAATTTTAATAGAGTAATGTT
ACATTTCTATCACTTTGTTTGGTTTTTTCAAGAGTAAGTAGCAAGGTCAACTTGGATCCAAGAGCATGAAAAGCTGTTGT
GGTAAATAAATTAAATATTCAACCATAAGCTAGGATGCTGTATGCTGAATCCCCCATGCCATATTCTTAAAAAAAAAAAA
AACAGAGAGAGATTAACGCGAATCATGTTAACAACGTCTTTGATCCTTAATTCTATCGCATATCATAGAAAACAAGTGAG
TTTGGAGCGTCAAACAAGCTCAGTATGTCACATCGAATAAGTGCTCAAAAAACAGTTTCTCACCGAATGAAAACGACAAA
GCAATTAAGTTTTACATGGTTCTCTCTCATCCGAGTTAGTGAAGTTTACCACTTTGCACAAAACTCAAAACTTCGTAAGT
ACTTCATTTTGTCAAATGTATTTTGCATTTTCTTTTCTATAATTCAATGGAAAATTTTAAAAACGTCCTCACACAGCTGA
TCTTGTTAACAAGGGAGCTAATTTATATTTATGAAGTTGAAAGAGAAAATTGGATTTAGTTATGAAACAACAGAGAAGGA
GAGAACAAAACTACATTCAACATTAAAGAACACTCCATGGTTTTAGCTTCAATGTAAATCTAAAAAGAAAAAAAAAAACA
AGAAATTGAAGCAACAAGAAAGAAGGTAAAAAGGCAAAGTGAAAAGGAAAGCGTGGACCCCTGACTCTATCTGTCGGTCA
TCGCCTCGGATTTCTCGCCTCTGCCTAAAAAGTGACACGGCAGACGAGGGTCCATTCTTTCATGCCCAATTTTTATTTTT
ATTTTAATTCTTCTACTTAGGGATTACTATATTCTACTGTACCGTTTAATTTTCTCATTCCAATCGCAATTAATTGATTC
GAAAAGGTGTAGATATATATATTAAATGGGCCTTTCCATTATCGGGCAGCTCAAAAACTCAACCACTCCTCTGACCCAAT
TCTATGCCTCCTTTACTTTGATTCCTTTACTATCTTCTTATCAATTATTTTGTAATCATACAATAGGTTTTCTTAGCATA
GTACACACCATTCTACGGTCCATAATGGGTATTTAATTTCTAGGCTACATAGTACAGTAGACAGCACAGTTACAGTCAAC
AGTGTTCGTGTTTGATGACACCATCCAACCATCATCTAATGGTGGGTTTCACTTGGGTACGTACATGTTCAATCTCTTAC
GAGGTGTTACCATCACAGTCATCTGGAAAATCCAACGGTGGATAAGGGTTTCAAGAACAGAGACATGTTTCATGGAGTCC
ACCCCTCTATTTTAGTAGTGGTGGTATGATATGTATGAACATGAAAGTGAATGGGTTCTTATTAGAATAGTATTTGATTT
GTTTTTTCAGAGATGATGAGAGGGAGGGAGGGAGGGAGAGAAAGGTGCATGGGGTCGTGGTCATTTCTGGAACTGAGAAA
CCCCAGCTGGTAGGGGCGGGTCTGCACCTATCTTTTGTCTTTTTTAACGTTGGCTTTCCACTCTTTTTACTCTTCTAAAT
ATAGCCCCCATACCATATCATTCTCTTCATCATCACCAATCTTTCTCTCTCTCACCACCCCCCTTCAAGATAGGCGAGAC
TCTTGGGGGATAAAGAGAATAGTTTGAGAATCACCGGCACGCACACACACGAAATCAAATTCCATATATCTCCCTCTTTC
ACTTGGAAGAATTGATCAAGATTTGCTAACAAAGGTAGCT