| Basic information from miRBase |
| hairpin accession number: MI0002227 |
| Located between position 7398187 and 7398329 on chromosome scaffold_14 strand + |
| mature miRNAs for MI0002227: |
| ptc-miR166j (MIMAT0001933): TCGGACCAGGCTTCATTCCCC |
| References |
| [1]Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants" |
| [2]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TGATAAATTAATAATTATTGTATGATCGAAAGGGTGGAGTCGACTACCTGGGTTGGAGATGCAGGATTTGACATTTACGT
GTTGTTTCTATCGAACACACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATAT
ATATATATGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGACACACACACACACACAATTTTCAAGACTGTGAAAGCGTT
GAAATATGTAGCCAGTATCGTCCTCTCCGTTTGTCACTCTGATGTACAGTATTTGGAAAGATAGAGAAGCATGGACCAGA
TGGTGGTGGAGCCTTTGGTTGTGTTATAGAGGTGATAGCATGGCAGCACTTCTTACGGGCACCTTCCGACCCAACCTCAC
ATGAAAAAAAAAATCCCTGAATCTGGCTGTCCAGGTACTTACTAATCATTCCATAATCGTTAAGGTTAATTAATTGCGAT
TAATAATGTCTGTAATCAAATGGTCACGGACCATTGTATCGAAAACCTGATGAAAACAAGTGCCCGCAACCCTGCCTTAC
CACGATTCAAGGCAGCTGTGAGGAGTAAAGCACCATAATTTTAAAAAGAAAACAGCTAGCATTTCGAGTTAATTATATTT
TAAAAAGAAGAATGTGACTCTGATTCTTCCACGCCATGGCTTAATTATACTATTTTCATTGACTTAATTCTGTAAGTGTC
AAATGTCAAGAATCCCACTGCTTGATTTACCGATTGAAAGTCTTGTCTGATAGAATGCTAATTAATCTGTTTGTGTTGTG
AAACACGCGGAAAATTTACATGCAGTAGCCTAAAAAATCTTCATTTGACTATTAACAGTACTGGATCCAATTTTATTGTC
ATTGAAAAAATTGATAAGAGACGGACATTTTAGGTAAGGCATCTTTCAATGTTGCCGATTTAACATATACTGGCAATTTA
TTACTGCAACTACGACTACCATGCATAGTACACATGGTGATTTGTGACCAAATAAGCAATTAATTAGAACCTCACGATCC
ATTCCACTAATAATTTCAAACGAGGCGAGAGGCATATCGAAGAGAGAGAGGAGAGAATGGACCCAAGGATTTTTAAGGCG
ATGTGTATAGGAAGATGATGGCTGTGCCAAGTCTCTATCGGGACACCGAGAAAGTAGATGACAGTTTTTAATAAGCCAAA
TAAATCTTTATCTCAAGGTCACCATTTGTTTCCTTCCGTCAACAACAATAATTTTAATAGAGTAATGTTACATTTCTATC
ACTTTGTTTGTTTTTTTCAAGAGTAAGTAGCAAGGTCAACTTGGATCCAAGAGCATGAAAAGCTGTTGTGGTAAATAAAT
TAAATATTCAACCATAAGCTAGGATGCTGTATGCTGAATCCCCCATGCCATATTCTTAAAAAAAAAAAGAAAAAAAAAAG
AGAGAGACTAACGCGAATCATGTTAACAACGTCTTTGATCCTTAATTCTATCGCATATCATAGAAAACAAGTGAGTTTGG
AGCGTCAAACAAGCTCAGTATGTCACATCGAATAAGTGCTCAAAAAACAGTTTCTCACCGAATGAAAACGACAAAGCAAT
TAAGTTTTACATGGTTCTCTCTCATCCGAGTTAGTGAAGTTTACCACTTTGCACAAAACTCAAAACTTCGTAAGTACTTC
ATTTTGTCAAATGTATTTTGCATTTTCTTTTCTATAATTCAATGGAAAATTTTAAAAACGTCCTCACACAGCTGATCTTG
TTAACAAGGGAGCTAATTTATATTTATGAAGTTGAAAGAGAAAATTGGATTTAGTTATGAAACAACAGAGAAGGAGAGAA
CAAAACTACATTCAACATTAAAGAACACTCCATGGTTTTAGCTTCAATGTAAATCTAAAAAGAAAAAAAAAACAAGAAAT
TGAAGCAACAAGAAAGAAGGTAAAAAGGCAAAGTGAAAAGGAAAGCGTGGACCCCTGACTCTATCTGTCGGTCATCGCCT
CGGATTTCTCGCCTCTGCCTAAAAAGTGACACGGCAGACGAGGGTCCATTCTTTCATGCCCAATTTTTATTTTTATTTTA
ATTCTTCTACTTAGGGATTACTATATTCTACTGTACCGTTTAATTTTCTCATTCCAATCGCAATTAATTGATTCGAAAAG
GTGTAGATATATATATTAAATGGGCCTTTCCATTATCGGGCAGCTCAAAAACTCAACCACTCCTCTGACCCAATTCTATG
CCTCCTTTACTTTGATTCCTTTACTATCTTCTTATCAATTATTTTATAATCATACAATAGGTTTTCTTAGCATAGTACAC
ACCATTCTACGGTCCATAATGGGTATTTAATTTCTAGGCTACATAGTACAGTAGACAGCACAGTTACAGTCAACAGTGTT
CGTGTTTGATGACACCATCCAACCATCATCTAATGGTGGGTTTCACTTGGGTACGTACATGTTCAATCTCTTACGAGGTG
TTACCATCACAGTCATCTGGAAAATCCAACGGTGGATAAGGGTTTCAAGAACAGAGACATGTTTCTTGGAGTCCACCCCT
CTATTTTAGTAGTGGTGGTATGATATGTATGAACATGAAAGTGAATGGGTTCTTATTAGAATAGTATTTGATTTGTTTTT
TTAGAGATGATGAGAGGGAGGGAGGGAGGGAGGGAGAGAGAGAGGTGCATGGGGTCGTGGTCATTTCTGGAACTGAGAAA
CCCCAGCTGGTAGGGGCGGGTCTGCACCTATCTTTTGTCTTTTTTAACGTTGGCTTTCCACTCTTTTTACTCTTCTTAAT
ATAGCCCCCATACCATATCATTCTCTTCATCATCACCAATCTTTCTCTCTCTCACCAACCCCCTTCAAGATAGGCGAGAC
TCTTGGGGGATAAAGAGAATAGTTTGAGAATCACCGGCACGCACACACACGAAATCAAATTCCATATATCTCCCTCTTTC
ACTTGGAAGAATTGATCAAGATTTGCTAACAAAGGTAGCT