| Basic information from miRBase |
| hairpin accession number: MI0005110 |
| Located between position 8504141 and 8504314 on chromosome 4 strand - |
| mature miRNAs for MI0005110: |
| ath-miR780.1 (MIMAT0004218): TCTAGCAGCTGTTGAGCAGGT |
| ath-miR780.2 (MIMAT0003939): TTCTTCGTGAATATCTGGCAT |
| References |
| [1]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [2]Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" |
| [3]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TTATGATTCTCTAATTTGGAATGGAATGCTTTCGTGAATATGAGAATGTTGAATACCAAAGCTAATTGTTAGTTATATAC
ACGTAATAATACATCTGTTGCATGGTGGGGTTTATATGTTGGCTCTATAGAATTGGGACAATTAATATTTTATATTCTAG
AGAAATTGAGAAGTGCTAGAGCAAATGCATTATTACACTTGGAACTACATTAACGTACAATCAAGAAAAGTAGTACATTA
TCTTATAATCAAAACAAAAAATAATCTCTAATGAAGACCCTATTGCAATTAACGCATGCACCACATAATTCATCGATTTC
AAGCTATAAGGATAATCTCAAACCGAATTTTGAAAATAATATGAATTGAATCATATTATTCTTAGACCAAAATAAATAGT
AGGGTTGTGACTTTTGATATGATATGTTTTTAGATGTGTTAAGTCCACGTTGATGAAAATATTTATTGCAGGATACCAAT
GATTTTTGTATATGAAAATAAAGATTTGACATATTTAAACAAAACTATGGGAGGGCAAGGAGTTGCAATAATTGGCTCCA
TGTTCTAAAGGGACATGAGGTTGTGATTTGTGGAAATGGAGACAAAGGTGGTCTTGTTCAAGGGTCCCCTTCTACCATTA
TTTGACCTTCATTTCATGCACATATCAATTAATATTTAGTATAACTTGCGAACAAAAACTACAAATTCATTATCACAAAA
CAATACTACATTCTATAAAAAAACTGATGACTTGTCTTCTAAACAAGTCTATAAGAATCACTAAATTTAATAAAGTTTGC
AGAATTTTTCTGTCAATCTCACATTTAAATTAGTGAATCACTAGTTTGATTAAGAAAAGTAGGTGTTAGTTAATTTCCAT
TATCATTGTTGCTTTGACTTCTCTAGACATTTGTTTGACTCTTGCTAGAAACTGTCTTCCAGATTTCAGCCAGCATATAA
ATGTTTGTCTATAGCTTTCACAACATATGTTCTGGAATATTAAAAGAGAAATACCAAAACGATTTACAAGTATGCAACTT
AAAAATAGAGAAATTTTTGAGAAAGGCGATAATTCCCTTCGTAAAATTACCGGCAAAAGAAAAAGTGGATAGAGACGCGA
CACTCTGCGCAAAAGTTTATGGTGAACATTGAGCAATAACATTTAGGGTAACAGACAAAGCTCATATTTAGAAACTGTGA
CTAAAATGGCAACAATACATGTGTTTGTGATAGCAATCGTACTCCTTCTACAATACATGTGTTAGTGATAACAATAGTAC
TCCCTCTAAATTTTAAGTGATGTTTAGACATATGTTAGTGATAACAATACATATATATATCATGTATTTCAAATATGTCC
TAGCTAGAAAATAATGTTTATTGCATAAATCAAAGATATACAATCACACTCTTTGGACTACAAACCAATATCACCTAGAA
AGTAGGGATTTAGAGCACAAAATACTTCAGCACAATACACCGCGATTTAATAGAGACTAAAAATGAATATGTTCTTCAAA
GAGGCCAAAAGCTTTATTGGTAAAATAAGTCAGTATTTTGCGTAGATTAATGTAATGTAAGAAGCTGTGAATAGGATGGC
GAGAAGAGGGAATGAGAACTTAATAGAACCATCAGATGATGACTTTTCTCTTGGGACTGTTTTTGATCCATTTCCATGTT
CTGTTCATAGAGATAATGTCAAAAAAGGATAATGTCAAAATAGATATGATTAGATTAGGTTCTATTTATAAGTTAGTCCT
TTACCTGAATGTGAATTAACCGAAGAACCACCTGAAAATAATAAAGTTCTGATGTGTGAGAGAAAAAAGATAGCAAAAAT
ATGAATCTAATGCATGGAAAGTGAGTTTATTTTACTATGGCAGCGACTAGCAGGAGGAGTTTCAACATGACAAGCTTTAG
GCAAAGCAAGAGCTTGTGTCTCATTAACATTGATCCCAAGCTGAGAACCTCCACCATCGAGAACCTGACACAAACACTCA
GAAGAATACCGGACAACATGAGCCAACTGGTTACAACATTGTTGAGACGGGAGAGAAGTGTTTTGAGTGATGAAGCTGAG
ACACGGCGCCATGCTGATTAGAACATTTGTGCAACTCGACTGAGCAGAAACAATCGACATTACTCTCATTAAAGCAATAA
ACAAGATTAAACACATTCTAGGTTTCATGTTTTTCTTGTGTTCCAAGAATCTCTCAAGATTTTTTTTTAATTTAGTTGTT
TGATCGCTTAATGGTTTGTGTTGGAGTCTTTTCTTTTGTGGTTACGTAAATAAATAAGAAGTTGAGGCCGCAGAAAAAGA
CGAAAATAAGGATGTGGCTCAATTTGCATGACCAACTTTTGCAACACCTTATGGTGAAGTTTGTGAAAGAATATGATTAC
GTTTGGTTTAAGGATATGTTTGTTGAATTATTTTTTGTGATTATATAAAGTTTTTGAGTTTCACCTGATTGAAATTTGAT
TGCTGACCTTTTCAATGAAAAAAACAAGAAAAAAAATAAGATACGTAGATAAATTTGTAGAAACCATTAAAATTATAAGC
AACACCAAACACTTACTTGTGAATTGTTCATTTTAATATGGTTGTTTGAGTTTATTGGTTTAATTTGTGTTGGAGTCTTT
TTGGGAGTTCGTAAATAAATAGAAACTGATATATGTCGCATAAAAAAAAAAAACAAAAAGAAGGATGTCAGGATGTGGCT
TAATCTGCATGATCTAACTTCTCTATTTGATAAAGAGCATGACCAACTTTTGCAATATAAATATGGTAAAGTTTGCGTTC
TTATTCAGAAACTGAGATTCCGATATGCTCCACCATACGTAAACCATTATTAGCCAACACTTCACGATCTTCACGACCAC
CGAAAAACAAAACCACGACAAGAAAAAACATCTTCTGACGAAACTTAACTCGAACCACCGAGTCCACGGTCAACGAATAT
TCAAACTAAGCAAAGAGCCTTCAAGAAAAATTCTTCAAGA