miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0005406
Located between position 19659532 and 19659715 on chromosome 3 strand -
mature miRNAs for MI0005406:
         ath-miR851-5p (MIMAT0004273): TCTCGGTTCGCGATCCACAAG
         ath-miR851-3p (MIMAT0004274): TGGGTGGCAAACAAAGACGAC

References
[1]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2]Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"




>promoter (3kb upstream pre-miRNA, by PMRD):
GAAACATAAATCTGTGTAGTTGAACAGATATGCGGTAAAACATATCGTCAGCTATTTAGTTAGTCTCCAAACTATATACT
CTTTCTCATAAAATAAATTCAGAAAAAAAAAAGTTGATATAGGAAACAAAATCATAATTAAATTCCGTGGATTACGTAAA
TTAACAACAAAAATGATGCGATCCATCAAAACATTAAAGGGAAGAAAAAAAGGTTATAAGAATTACTTTCCCTTAACGTA
TGAAATAAGAAAGCTCAAGTTTTTTTACAAATAGCAGAAAAAACGAAGCTAACAGGTCCTTTACAATGCGTCGGCCCAAA
CATCTCGTCTGTAATATAAATCCTACACCGTTCTTTTCCAAGACAATTCTGCATAAACAAAAAATAGTAATCGATAAGAA
GATTTATCGTCAAACAAGATTACTAATGTTGAGTAACTTTGTTAACCTCTTTGACGAGTCTCAAAGTAGCCGGCGCACCG
CAGTTTCCACGTTTAAGCGTTTCACATGATGAACCACCGGGCTGACCATAGTCAGCGAATTTGATTCGAGAAAAAACATA
TCCTTTGTCGCAAAAAGGTGCATATATGATACCATCCTCTGACGGGTTATTCGACCCGCACAGAGGATATTCTTTGTCCC
GTTGAGGAGATCCTCCGGACTTTGAATTGGAGATATGTTTCGGATCACTATTGATTTTAGTGCCTCTTGCATCAAAAGAA
CTGTTGTTGATTTTTGAAGCAAGATTAGAAACCGATGAAAGAAACATAACAAGAAGCAAAATGATGAAGCAATGACGACG
AAAATAATGTGAAGTTTCCATTTTGTTTTTGTTCTCTTACAAATCAGAAGGATAATGAAAATTTCTAAGCAACTTAGATA
TATAGGTGTGTTTTCAAAATATATGCTTGTTAGATTAAATTAGTATAGAGACGAATTGTGTGCGGATGTAGCTACGAAGT
TTACTATCAATTTTTCCTTTTAGCTATGTTCTAATTTATTTTTATTCTTTATTCACTTTCCATACTTCTTGTCTTTCGGA
GATGTTGGTGAAGGACATTCATTCTGACTTTTTCGCGATTACTAAAAAACATATTTGCATTTTCAGAAGATATTTTAATT
GGTTCCTAAAAAAGATAGTCTAATTGGCTTTCACATCCCATAGATCTTCAGGCTTTTGTCTCCCCTAGTTGATTGTATTA
TTATACTTTGAATATGTTTTTAATTAGACAAGTCATATGTCTTCTTATACATAAGCTTTATTGTTAGGGTGGGTTTGGTG
TGAACATGAAGATTGATCTTCTTCTTAAGGTTTTGAATACCAACAAAAGTTTGATTTATATTTTTTAGAGATTTGTTAAT
CTCATTTTCTTCTTATATGAAACATAACTTTTTCTTCTGAAGTGGATTCTTACCAAGTTGGCAGGTTATGGATTCTTTAG
ATCGACCGCTTTTTCACAATCTCTACTTCTTTAAGCAAAGTCGTACTATTGGAGCTTTATTTTTTCACTAAGGACATTGT
ATTGTCATTTGAATTAGGTTAGCATTCAAAAACATAAGTATGGCGATGGTATGCATTAATGAATTGTTAATTTTCTTAAG
CCTTTTAAGCTACTCGCATGAACTTCATTTGCAAAGAACCTCTATCGGAGACGAGGAGTTCCTCTTTGTCGGCTGGTATA
TCTTCTCATAGATGAATTGGTAATAGCATATTTTATTATAACACTCTTTCTTATGCATATATAATCGGTAAGAAAAAGAG
TTCAATCAAATACGCAAATAGGAAACAAGAGCCTGATTCAGTGGATTGCCTAATTAGCACACATAATGATGCGCTCTATA
AAAGGTTTTACTAAGAAAAAAATATATCATAAATATGATCAACAACTACTTGATAAACAAAAAAAAAAGAAGAAGAAGAC
AAAATTTGTTACAAGAATCACTAATTCTTTAAGTAACTTTTTTCTTACAAGTACCGGAAACAACGAATCTAAGTGCCGGT
CCTTTACAATGGGTTGGACCAAACATCTCGTCTGTCACTGGAAACCAACATTCTTCTTTTCCAAGTCAATTCTGCGTAAG
TAATAACAATAGATAACAATAATAAGATATGATGTATTAGTACTCATTTCAAACAGATAATTCATATATATACGTTTAGT
TAAACCTTTTTGACGAGCCTCAAAGTAGCGGGTGCGCCGCAGTTTCCACGTTTAAGCGTGTTATTCTTACAGTCACCAGT
GGGTTGGCCATAGTCGGCGAATTTTATCTCAGAGATAACATATCCTTCACCACAAAAGATGGGCGATAGATCGACGCTAG
GCGCCGGATGATCAATGCATATTGGCAGTTGATTCGGTCGATATTCTCTTGGATTTAAACGATAAGAACCGTTGATGATA
TTCCTTGTATAAAAACAAGACACATAAGAAACGGATAAAAGAAGAAGCAAAACGATGAAGCCATGACGATGAAGAGAATG
TGTAGTTTCCATTTTTATTCTAGTTTTTCGTTCCCTTCTAAATCAGAAGGGTGTTGAAAAATGCTAAGATGGTTTAGTAC
GTGTAGTTAAGTATAAATATGTAATGTTTTGATATTGATATATATGATAATATTAGTAATTAAAGTTTCTTAGAGATGCG
AATTTGTGTGCGGATGTGGCTGCGAAGTTTTCTATAATTAGGTTTATCATATTCCTACGAGAATATTAAAACAACTGTTT
TTATTTCGCAAAGAGAACAACAAATTTTCACACTATCTATTTTAGAATGTTCAATCTTGACAATTTGCATTTATTGCTTG
ATTATTAATTATGATACAAGTATAGAATATCAAAATTCAAGTGTCATATAATTAGTTTCGGATTAGTAAACTTCAATTAC
CATAAGAAAAAAAAAAGGAAGGATTTGACTTCACATATATTCAAGAATTGCTTCAAAAACAAAAACATCAATCTTCAGAT
TTGGTTAGCATATACTAAAATCCAACAATAGATCGTCTCT