miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0000676
Located between position 25443203 and 25443343 on chromosome 12 strand +
mature miRNAs for MI0000676:
         osa-miR167a (MIMAT0000641): TGAAGCTGCCAGCATGATCTA
         osa-miR167a* (MIMAT0006780): ATCATGCATGACAGCCTCATTT

References
[1]Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
[2]Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK, BMC Plant Biol. 8:25(2008)., "Identification of novel and candidate miRNAs in rice by high throughput sequencing"




>promoter (3kb upstream pre-miRNA, by PMRD):
GGAAACAAAATAGGGATAACTCAAACATAGATTACCAAAGGGGACAAACTTTGCCTTGCGCTGCTGGAGAAAGGGACTTT
AGTTTCGATTCACAACAATTTTTAGTCCCGTTTGTACAACCGTGACTAAAAATACCTATTTTTAGTCACAGTTGAAATAA
CCAAGGACTAAAGACGCATACCAAGTCAAAAAAAAATGTGTTGGATGTGGAATTCGAAATCAAGATATCTCACATTAGCC
CTCACGCGTGTTACCATCCCGCCTACTACACACATCTGACTTAAATATGCTTTCTTTTTAAACTAACCCTAGATGTATCT
TTAGTCCCAGGACTAAAAATATCTTTAGTCCTGATTGGTGTCACCAACCGAAACTAAAGATCGGTTTTTAGTCCACCATC
ACCAACCAGGACTAAAGATGGTGGACGAAAAATTGTTCTTTAGTCCTGGTTGATGGGGCCTGATAGCTTTTGAACCATGG
TTAAAAATGATTTTTAGTCCCGGTTCCTATTCGAATCGGGACAAATGTGATTTTTGTCATCCGAGCAAAAATCAGTTCTC
CTGTAGTGTTATACTATATAACAAATGAAATCATATATATACCCTTTGAAATGAATATTACAAATAAATCTCAGTACAAG
CTAGCTAGCTATGGATATAAATATGTGTCTTGATTGGTTTGGACTAGCTTGCTGCAGCTCCACTTCTTTGTCCTTAACTA
AATCGTGAAATTATCTAATCTATTGATTCATTTTTGACAATATAAAGAACCACGAACATATATACCTACAGATTAGTCAA
CTTCTTCATATATATTACTCTTTTTATTGTTTTTTTGACGTTAGTCAGTTCAAACGTCAAACATTTTTGCAAGAAACAAA
GGAGTAGTACAACCCTACGCATACATATACCTCTAGATCTACTAGTGCTCATGCACTTTTTTACTCAGTACAATAAATTA
ACTAATTATACACTTGAGGTTCTAGTTGATGGAATCCAAAAATTAATTAACAATATAACACTCTTCGCATGTGTCATCAT
GAGGAAGAGTAAGAAGGCTCTCAAAATAAAATGGTTAATTCTCCTATAGTAACTTCAATTTTGACAACGAATAATCCCCG
GTTTGAAGCATGCATGATTTGGCTGATTTTGTTTCTCTCTTGCAGGCGTGTTTGTTATGGCATCCCTGAAAAGAAAAAAG
AGCCAAGTAATTAAGGAACACAACAATACATAAAATATGTACTAGTTCTTGGATTAATTTAAGTATATGCTCACTAATTA
ATTTCTACACATACCAATTACAATTTCTTGCACAGGCTGCTGCTACTGCTCTTGCTAATTCTGCCGCCGCCGCTGGATCC
ATGTCGACGAGCTGCAACGCCGGGAGCGGGGGCCGGCGGCCGTCCGTACAGTGTCGCCGCCGCCGGCGGCGGCAGCAGCA
CCGCCGGGTAGGGAGGGTAAGGGAGCATAGCTCCGAATGGCACCATCGCCGGAGGGCCGGGCGGCGGCGCCGCCCCTGGA
GGAGGAGCAGCAAGAACCATCCCTGGATGCATCGGCATCGTGACCGGCGGCGGCGGTGGCGGTGGATGCATGTACGACTG
CGGGTGCACGGCGGCGGGGTACAGCAGCGCCGGCGGCGAGCCGACGACGGACATGGCCTTGAGCTGGTGCTGCAGCGACT
TCATGTACTGGATTGTCTGGTCCAGCGTCGACGCCTGGTTGGACTGAAATTTATGGACGCATCCATCCATCCATCGCCAT
GGATGCCGGCCGTGTCAGTGATGATCGAAGCACACATATAATTTATTTGTTTTTGGAAACTTATATGACATGTACTCCCT
CCGTTTTTTAATAGATGACACCATTGATTTTTTTCTTACATGTTTGACCATTCGTCTTATTCAAAAATTTTATATAAATA
TATATATAAGATATAAATCACATTTAAAGTACTATAAATGATAAAATAACTCATAATAAAATAAATTATAATTATGTAAA
TTTTTTGAATCAAATGAATGGTCAAACATTTGAGAAAAAGTTAACGGCGTCATCTATTTTAAAAAACTGAGGTAGTAGTA
CTAGAAATTATTAATTGATCGATTCTGATTCAGAGAATGCACGCACGCATGCAGCAGCATGCGACAAATTCTTCAGTTAA
GTCATTTAGTTTGTCCACTCACGATGCATGACGACACACATCGATATCCTATTGATTAATTATTTTTAATAATCTGTTCG
TAATTAATTTCATTTGCTATTCTAATTTCAATTAAATTAAATCGCATGACAAGATAAATAAAATAGTTAAATTCTACCTA
TACAAGTCAAAATAAAAAAAATCCATTATCCAAAAAACAAGTTGAAACAAATTAAAATCTAAATACGTGTATGTTCACAG
CCATATTTTTATCTCTTCTTTTCAAATCTAAACCTGCAAATTTGTGTAATGATATATGCATATATTGATCTATATATGTT
CTTAAAATGTTTTAAAAATTTTCATAACTATCTCGCTGCAATGAAATAAAAAACAAACAACAGGACATCATTTACCAAAA
AAAAACAGTAAATTACTGAAAGTTTTTACCGCTGACTGACCTTATCGCATCCGGGGACGAGACGCTGCAGCGTCCTGAAC
CTCTCAGTTATCTTGAACCTCCGCCTCTGCAGATGCATCCAGAAATTTCGATCAATTAAACTAGATGGATGGATGGATGC
ATGCAAGAGTTCATATTAGTATATATGGACACATGAAATTTAGTGAAGAGTTCATCGATCGAATCCCCACTTTTTCTGTA
AGGTTGTGAGCTCCTGCAGCCGCGTGGTGATGCTTGCTTGCTTTTTCCTGCCGCTGATGACGCCTTCTTCTTCTTCCTCT
CGCCGGAGTCGTCGCTTGTTTCATCCTGTGATACATGCATGACGATCAGGCTCATCAGAGATTCAGAGTGATCAGCTCCA
GAATTAATGTACAGAGATCAGCTGAGAGATATGGTTCACT