| Basic information from miRBase |
| hairpin accession number: MI0000975 |
| Located between position 11137539 and 11137915 on chromosome 1 strand + |
| mature miRNAs for MI0000975: |
| ath-miR167d (MIMAT0000905): TGAAGCTGCCAGCATGATCTGG |
| You can find this miRNA in ASRP: miR167 (accession: ASRP535) |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [3]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [4]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [5]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
GTATGAACATTATTCTTCTGTTATCGGTTAAGCTTTGTGGAGAGGGTTCTTTGGGCCAAGAATCTATCTATCCTCTTTAC
AGAACACTAATGAGTCATGTTCCGCATATGTTGGACGCAATAGAAAGAAGTGGGCTGCTGATTGCGTCCATGCCTAAGGG
AGGTTAGAAGCTCTGGAGTGGTATGTGATTACTTCTTCATTTCTTTAGTAATTCTTCTTTGGCCGATTGATACCAGCAAG
AGAAAGAGGGAAATGCTATAAGAACCATGTAACGCTAAGAGAGAAACATCTTTCTGATTAGTATAGGTGACGCATGACCT
CGAGGCGAGGTTTACTTCGGTAACTCGAAGGGAACTCGTATATTTGGATGTTCTTTTTATTAGTCTGCATTCAATATCGA
AGATACGATCGAGTTACCAAGTAAATTAAGAAGCAGAACTAATAGCAAAATTTACAAACGCTTGCAATTGTACAACAAAT
TGCAATCATATTATGGAATTTTAACCTCTCATGAACACAAACTTTCAACCACTTTAAGCACAAAACACTGAGCTTATAAG
AAGTGCAGAGACAGAGTATATAACGCGATGAAGATGATGCAAAAGATAGAGAAGTAATGAATGCAGAGCATAAACGAGGA
AACCACACACTAAAGGTTTAACGAGTTACGACATATTGTATGTTTTTAACTTGAAACACAATCTTTGTTTGACTCATCAA
GTTTTCATCTTCCATATTTTATTATGGTTGTTTTTTCATTTTAATAGAGTTTGAGTTTAAAATTTGCAACTAGCATTTAA
TTAAAAGGGTAAAAAACATTGTGTTTGTTTCTAACTACCAACTTTGAAATAACAATAAAATAATATAAAATGCTAGGTGG
CAATGCTGATTGATGGACACAAATAATCAAGTCATTGATTTGGTTTGGTTAACGAATCTTATTCACAAACTAATTGTCAA
ACCAAGAAAAGACGAGTGGGGATTATTTTGTTCGTCACACTTAATAAAGTCTAATTATCTTTTCTTATTCCAATCATGGG
AGACATTAAAACATAATCACGTTTCTATGGACCCAATTATTAAATAATTTACGTCAATTATAACAACAAAAACAAGGAAA
ACATTTAATGGAGTTATCATGCATAGACTCGTAGCGTTATTATACTTGTTTCTTGTTTTTGTAGTTATTATGAAGACAAT
TGTGATGTACATAATTATATTATGAAGAGATATATCAACTAATTAGTAATGCCTTCGTTTAAAAGTTAAAATTAACAGTT
CTTAGTTGAGTACTTTAATGTGGTTTTTTACTTTGTAAGGAAAAAATGTATGAAGCAAAATATATCTACGTACAACTGGA
AATGATTCAATTTATGAGTAAAACACAAAACAAAAGACACTAGAGATGACAAGAGACAACACACTACTCAAGACAACTCC
ATCTTCCAACAAATCTTGTCATGCCAACGTCTATTTATTACTACTTGTAAGCACATCGATTCATTAATACACTTATTTTT
GTTTCTTGTCACTCCAATTTATACACTTATATACTAGTATAATTGTATCCGAACATGGGAAGTTTTGTGATTGATTAGAA
GAATGTGGTGTTTTTATGCGTGGAAATATGATTGTTTTCATAAGTAAAATAATATATCAATTTTCTTCTGGTATTGATCC
GGAGACTGGCACATATATGTCTAAAAAATCTATTTCGAACGTTTTATTACGAGTGTTCGCGCATGAAATCGAAGTTTTCA
CATAGTAATTTACAAATATGTATAAGTGTTTTTGTGTATGCATGCATGTATGTGTGAACATGTTGGATGGATAGTGAGGG
CTGAGGACAAAAAGAAAGAGGAGATGCAATAAGACAGAAGACGCGTGCAATGAAGATTTCGGATTTGTTCGTATCCTTTT
CAGTTGTCTCAGCCATTAATTCCTAAAACCCTATCTTCTCTTCTTCATCCATCTTTTTCGTTTCTAGAAAAATATCTTAA
TATAGTTACGTAAATATTTAGTGGTGGTATGTATAATTATGGCCCGCTTATTCAATTGAGGCAAATAACCATTTGAAGAT
CGAAACTCTATTATGTATTTCTTTTAACGAAGGAGAAATATGAATAGACAAAAACAAAAGTTTACAATGGTAGATTTTAG
TAGGTGTGCCAACTATTAATTTCCTTCTATGATTGAAGTTGTAGGTTAAAATAGATAACTAATGCCATTCTATTCATGTA
AACATATGGTGTTAAACTGTTAACCATTTAACCGTTAATTTATACCATCTACTGCTAAAAATTTAGAAACAATTGTACCA
TATCATATGTCAACTAAACTATTTTCATTATTTATGCCATTTGGAACACTTGATTGTTAATAAAGAATTTCAATATAAAC
TATTTAAACTAATATATCATAGAAAGACGACAAAAAAATACTCGACATATTTGTTATTCTCTTAATAAGGATTTAATTTA
GCTAAAAATGAAAAAAATTGAGTGTCAAAAACATTAATAATACTTGAATGAAACTGTCCAAACACATATTCTCCTAAATT
CCCAAGGAAAATATCTTACATTGATAGATTATTTATATAATTAAGAAATATTAATATATAGATTAACCGATATTTTTAAA
CTATAACAAAATATCATGATCCCAACTGTATTATATTGACATTTTATCGTATACCAAAATTAAATACACATGTTGACAAA
AAAATAGAAACAAAAAATACACAATTGTGGTCCATTTATCCAAACAAGGATCTGTGTAACGTGTATTATTATAATTTCTT
ATTTAAATAGTTATTCAAAGTTGCTGTTGGTGATAATTTTTTGTTATATACATATGTGTGTGTGTGTGAGAAAGAGAAGA
ATCTCGATTAAGATTATCAAGCTGAGCATTTTTCCTGTCTCTTTTCTTCTTGTTAATGTTTGCTCTCTCCTAAAAACTCA
AATCTTGAAAAAAGCTTCACAAGGAGGCATTTCTCTTCTC