miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0002194
Located between position 11956115 and 11956215 on chromosome scaffold_11 strand -
mature miRNAs for MI0002194:
         ptc-miR156k (MIMAT0001900): TGACAGAAGAGAGGGAGCAC

References
[1]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




>promoter (3kb upstream pre-miRNA, by PMRD):
GTCATGTTCATGCATATCTTGGTAATATCAAACATAGTTTGAAGAAGATGAATATATGTGTATCAAGGATATAATTTTTA
TGGATTTTTGGGATAAATATATAGGTTTTAGAGATTAATGAAGAAGGAAAAACTAAAAGAAAGCAAAAATAAAATTTTTG
AAACAAGAACCCGTTAAACAATAAAGAAACTAGCAGACTAGGTCCTCATAACCGATCAACCGGTTCTATATAAGTAAAAT
TGACAAACAAATTTTATCTTGATTTTTCTATCCTTAACCGATTTCTCACTCATTTTTTTCCATTACAAGTTACAACTACT
ATTCATCACAGAACTAGAAAACCTAGTTTCCAATCTCAAAAACACCTAAAAAAACCACTAAAACTTAATCAAAACTCAAA
CCAAACAAAAGTTTCACACCCATTCTTTCAATACTTTGAAGTTTTACCTTGCTAATAAAATCAATTGGCACAAGAGGAGT
GGTGGTGGTGATAGTTTCTCACCCATTAGTATAAAATGATAAACTTTAATGATTTAGATGATAGTGTTGGGTAAAGTGAA
TGTCTTGGAGTTCTAATTTAGTTAACCAATTCAAAGCTTACTTGAATTATGAATATGATGAGAATGGTTAATGGAGAATT
ATTAATAGAACTAATGGTGTAGACATAATGCTTACACGTAGGATTTTGCATGATTATTTTGGGTGTAAGTTCTCTAATAT
GCCTCAAATTTACAAGACAAGTGGTTTTATTAAGGAGTATGGTTTTCCAACCAAGACAGGCGATTTGTATTCATGTTTGG
TCCTAATATTGATGTCGATACTTAGTGTTATACCTAAGGCTATTTCTACAACATGTATATATTGAGTACTATGACAATTG
ATGGATGCTACTCAATATATGAATTTTGTTATTTGCTTATTTGCCATGAGAGGTACTAGGATTGACTTATTGGTTTCAAG
ATCTATATTCATAAAGATGTCGGTAGAGTAAAAAAAAAAAAAAAACCGAATGCTATGTTCACCTACATAAAGAAGAATCT
TCATCTAGCATTCATATGATATCTAAGTTTTTCACACATCATATTATATTTATCTATTTGCTATATATTTGAAACATATT
TGCACTTATTTGAGTATTTGTTATGTCCTTGTTGGTTGAAGATAGAAGAAGGAGAATTATTATGATGCTAGTGATATTCT
ACTTGAATGTGGATCAAAGCTTATATTCCTCATGATTGGTATATGAAAGCTTTGGTTTACATTTACAATATATTGGTATA
TAAAGAGAGCTTAAAAGGCAATGAAGCTTGGAGAGGGGGAGCTTTTTCTATCCTTTAATATATCTTGGTAGGCATGTATA
AGACATACAATTTCTAAGTTATATTAGTTTGAGGAATTACATGTACGAGATATAATATTAGATGGTATATATCTACTCTT
GGCATCATTAAGAATTATACTTGAATAAAATACAGCTTGCTCTAGTCTTGCTTCAGCCAACAAGCTTCCAATCGAGCTCT
CTTCTACCTCCATTATCCTCCTAGTTTTGAAGGTACCAGATATGATGGTGGATTTGACATATACTCTGTGATCTTGTCGA
ATGCATTCCAATGTTCTTGTCTCCAAACAAAGTGATTTCAGTTTCAACAAAAGAGTACTGAACACCTTCGTCTTTCTTGG
AGCTAAGAAAAAACGTAACCATTCAAATTAGATCGGTCAAATATTTGCTAATATGGGACCGCTCAAGATCTCTGTCATTG
CCATGAACGTGTAGTGCGTGCCAAAATGAAGAAGAGAAAAAAAGAAAAGGAAAAAAACCTCCTGGGTTAGGCACGCGTGA
TGCAACGATAACCTCCTCGTTCACGGTTTCTGTATTATGAGTCCCTTTCTTTGATCTGCATGCTGTAGCTGGTCACAATA
ACCTCCTAGATTTGGCAATACTTTTATGACTGAGATTGCTAATTATACGATACTTGCCAACCTTACATGACTAAGACAGA
GTAAATGCAAGAATATTTAGCAAAATGCTTTTACTATTTCAATAAACGTGACAGTGAACCTTTTCTTTTCTTTTCTTTTC
TTTAAAAAAGAAACACATTAGTGTAGAAAGTGTATGAAAAAAACAAAATAAAAAACAAAATAAAAGATGTCTCATTCACC
ATCTTCATTCCCAAGCATCAGTAATCTACCGTGGTTAGCCGGTGTTTGGCTTATGCTAATGGGTAGTTAGCCGGTTACCA
AGTCAGTCCCTGGCTATGGCTATAAAAGGAGAGGGGGGGCATGAATACACATTCATGTCACACACACTTGCCGGTGGATG
TCATCTTCATTCTCTCTCTATGCTTATCATTTTCATTTACTTTTTGTTGTTTTAGATTTTTCGTTGTGGGTTTCGTCTAT
TTGTTTCGTTGAAAAGTGATTGCTGTTTAGAGAAGAAACATTTCAAAAGAAGAGTCAGCTGTACGTATATCATGTTTGAA
GATGCAATATGAATATATACATGTTTTCCAATGTTAAACTAAACATTCACAAGTAGAAGTCCCGATCCTTAAAGTTATAC
ATTTTCAATCTTTTCAAGTTTCAAGATCTCCCTCTCTCTCTGTTGTTCAGCCAAGAAAGTCTTCAACAGCTTATGAAGGT
TAGTGATATTGCTTGCTTCTCTATATATTACAAACATTGTATAATACTAGTATTGGATATACGCGCACATGCCGTGAAAG
GGACAAGAAATTCATTGGTTTGTAAATGTATATATGGAGTTCCTATATATGGTCTGTGACAAGCGACTCCTTCCTTTATG
ATATAAATATACAAAATACAAACAGATATTACGATAGTCATAGAATGTATCATCAAGGGCTGCACATAACGAAATTGTAT
TTTTGCATTTTTATAGAATACATGCCAAGCTAACATGTCAATGTCTTTAATGGCAGATAATGAAGAGCAAGGCGTCTAGG
GCTTGAATGAGAGGGAGAGAAGAAGAGAAGAGGTGTGAGG