miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Basic information from miRBase

hairpin accession number: MI0000363

Located between position 25041307 and 25041406 on chromosome 3R strand +

Overlapping with sense strand of CR31044-RA (exon 1).

(Ensemble: FBtr0085391) (FlyBase: FlyBase)

mature miRNAs for MI0000363:

dme-miR-279-5p (MIMAT0020807): AGTGGGTGGGGGTCCAGTGTTTCACA

dme-miR-279-3p (MIMAT0000341): TGACTAGATCCACACTCATTAA

You can find this miRNA in TARGETS:MIRTE: miR-279 (accession: miR-279)

References

[1]Lai EC, Tomancak P, Williams RW, Rubin GM, Genome Biol. 4:R42(2003)., "Computational identification of Drosophila microRNA genes"

[2]Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T, Dev Cell. 5:337-350(2003)., "The small RNA profile during Drosophila melanogaster development"

[3]Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC, Genome Res. 17:1850-1864(2007)., "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs"

[4]Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M, Genome Res. 17:1865-1879(2007)., "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes"

more data

Data from CoGemiR