miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0008272
Located between position 21472902 and 21473039 on chromosome 04 strand +
mature miRNAs for MI0008272:
         osa-miR1869 (MIMAT0007822): TGAGAACAATAGGCATGGGAGGTA

References
[1]Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"




>promoter (3kb upstream pre-miRNA, by PMRD):
ACGGTGCCAGCATCTTTGGCGCTGTCCCCGTGCCACCACGTGGCTGCCATGCGCTAACGTGGCAGGAGGACAACGCTAGC
CATACTGGCGCCACCCCTCCCCTCATGGCTCCAGCCATAATGGTGCACTCTCCCCAGGGGGTGGGCGGCACTTAACCGCG
CGGGCCCCACCCCCTCCCTGCCCATTCACCCCCTCCTCCCCAGCCCGAGCCTGAGCAGAGTTCTTGCTGTCTCTCTCTCC
CCGTCATCTCTTCTTCTCAAATCCACTCGTTTTGGAGCCGTTTTTCACGAGATTTTTTGGGGAAATCGAAGAGCAATGTA
TTCTCCATTTCCTCCTCTCTTTTTTTCGTTTTAATTGGTGGAATTTGTAGATCGGAGGGTAACCCTAGAACCGATTCTTT
TTTTGGCAAAAAAAGTGATTTTGACCGTTGCAAATGGGGATTTGTTGATTGTAGAGTTACATGTGTACAATGTGCTCATT
GGTCCTACGATTTTTTTTTAGTATACATGTGTTGATTTTTAGGGGATTTTTTTGGAGTATATATGTGGTAATCGATTTTT
CCATACAACCCCGTTCATGTCTCACCTAAAAATCAACATGACCACATATATACTCCAAATAATCGTAGCATCAACGAGCA
CATTGCACACATTTAACACTACAATCAACAAATCCCAATTTGCAACGGTCAAAATCACGAAATTTGCAAAAAATAAAAAA
TTGGTTCTAAGGGTTACCCTCCGATCTACAAAATTCCACCAATCAAAACGAAAAAAAAGAGGCCACAATGGAGGAGAATA
CCTTGCTCTTCGATTAGCCCAAAAAATCTCATGAAAAACGGCTCCAAAGTGAGTGGATTTGAGGAGGTAAGGGAGGGGGG
AGAGAGAGAAAGCGCAACAGCCCTGCTCAGGCTGGGGAGGGGCCGAATGGGTGGGTAGATGCATATAGGTGGGGCCCGCG
CAGTTAAGTGTTGCCCACCCCCCGAGGGGAGCGCGCCGGTATGGCTGGCGCCAGGGGGGTGGGGGGTGGGTGGACGGGGC
GCTGTCCTCCTACCACATCAGCGCAGGGCGGCCACGTGGTGCCATAGTGGCACGGGGACGACGCCAAAGATGTTGGTGCC
GTCCAGTTGGACCACGGCGGCAGCGCCTCTGGTGCCACAAAAAGAACTATTCCTGGAATAAGTTTTTCCAAGGGTCTCTT
TGTAAAATAAGTTTTAGAAAAGGACCAAATCGTAAAAAATCTAGAAGGGTGGTTGGGGGTAAAATTAGTTGAAAATTAAA
TGAGGTGGTTGGTAAGAGAAGTATAGTACTCTATACATTGTTATATTCAAGGACAAATTTCAAAAGCTTGAAGTCCTTAT
ATTTGTCGACGGAGAGAGTAGCTTTATATTTCATACTAAATATGAATAAACTTTAGAAACAATGGTTGCACGTAGACAGT
TGCTGAACCGACTCTAGCAGATCTGGAGGAAAAAAAAAAGAAAACTTAACACACCTAAACTTGACTCTAACAATGGTTGC
ACTTATAGAATCAGTAGTCACTCGAGAAACAGTTTGTGACTTCTTGTAGCATACACACATAGGGGGAATTTACCCACCTA
AACTTAGTCTTTCTAAGTTCACACATTTAATTTGAGACCATAGGATTTGAAGTGTTATTAAGACCATGCTGAATAGTGCA
CTACCACGGTTAAATATTTTTGCAGAAAAAATCCATTAATGAATGAAACTTTCTGAAAATCATAACACAAGTATACTGAT
TCTCTCTTACTAGATTAGTGGTGGTGACATATATGTAGTTAAAGAAGGTGCCCTTGATTGATAACCCAAAAAATTAGTCT
AACATTTGAAAATATAAACGCTGTAACTGAAATTCGGATAAGCCCTTAAGAAAATCTTATTCTTTTGCATCAAGCTTTTG
TATAAAGTATAAACTGACTAACTGAGGTAGTCCAACCTGACCATATACATCACTGTACTGTTCAAGTAGAATGAACGGCA
AAACTGATGGGCAGATCTAGCTCCATTCTGCAATTGAAAATCACATATTAGAAAACCTTGGAACTGATGTTCTTTTTTCT
TTTTACAGGCTGACATATACTGCAAAATTACTCTGATAGTAGTCTAATATAAAGGAACACATGATACTAAGTACACATGA
GCACGTAACAAATGTATCTAATGTCACAAAATTGTATTCGAGTAGATGAAATAAGTTTTATGACCTCTCTTAGTATGCGA
GACCACTTATTGTATGCAATAACCATTAACAGGTGGTCAGATTGTTTATTATCTGCTGTAGAAGCAGATCCATCAAGGTT
TTCATTCATCAATGAAGCCTTTGCCTTCTCCACATTTTGCTTCTGCATTATCAATGAAACAATGTCATGATAGTGCATAT
CCAGATTATATAAATTATTGACCACGATAATATCATAATACCTCATCTTTTGGAGAGATGAATGGGGATTTATAACTCAG
AAAAGCAGCAACAGAAAGAATGGGAGATAAGCAGCCAAAGATAGCACCATAGAGCATCATCTGCAGTCGCACAGAAGACA
AATCAAAGCAAAACATTAAATAGGTAAAGTACTACAAATGCTCCACAAATCGATGGAACAAACATAACAATTACTGTCAT
TATTTGTTAATAACATGCAGAAACTATTTATTTCTATGAACCCTGAATTATCTGTATAGAACTATAATACCATTGGGAAT
GCTCAAAGGGCCACAGATATGAAAAATAAGTGGTAAAACTCTTACTGTTAGTCAATTACAGAGGTGTGAAAAAATACAGT
ATTGCCTACAAAAATTACTGTGCACTAGAGTTAAGTACATAAAAGGTAGGAAATAAAGACATTCCAAAGGGACATGAAGA
ACATAATAGAGTTGTGATGTACTGTAGGTTCTTCTTTCTTTAATGGAATGACATGCAGTTCCCATGGGCGTTCTCGGAAA
AAATGGAACATAATAAAGCTCACTGAAGTTTATTGTGAAT