| Basic information from miRBase |
| hairpin accession number: MI0000981 |
| Located between position 11482879 and 11483257 on chromosome 4 strand - |
| mature miRNAs for MI0000981: |
| ath-miR169g (MIMAT0000911): TGAGCCAAGGATGACTTGCCG |
| ath-miR169g* (MIMAT0000912): TCCGGCAAGTTGACCTTGGCT |
| You can find this miRNA in ASRP: miR169 (accession: ASRP276) |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets" |
| [3]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [4]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [5]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [6]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
AAAAGGACTAACCTGATGAACATCTCCCATATAATGTGACAAGAACAAGAGAGCCTCTGTCAAGTTGTCTGCCAAGAACA
GAAAGAAAAAGACTTCTAAGTCACACTATTATGATCGATGTACTCACACAGAAATCAGTAAACTGAAACATTAAAAGAAG
TATCAGATTCACTTAAAATCTAACTCACAGTGGACTATATTCTGTGAGTTTTCAGAAGCAGACATTAACTGGTTTGTGTA
ATTGAAGATCGCTCCTGTCACACACCAGTCCTTATGCTTATGAGTGTCATGGCAGTCCCCTTCACAAAACACAAAAGGAC
ATAGAGTTGAACTTAGAAAATACATAGCCAATGGAAGCAGAAACAGAACAGAAACATGTATGAAGCTGGAGGAAAAGATA
ACCCACGGCAATACTCGTAGTTGCACCTGTATTCAGGTGTGTTAACATAGTGCAAAGTGCTAGTCCATTGCCATTGCGAG
AGTTTTTTAATTTCATCAGGCCATGAGCAAAAATCTGCTAGTCCACCACCATCAACTGATTCAGGCAGAAGTTTCTTCAC
TGCAGCAATAGTATCATCCTCAAAGAATCCCTGAGGATTTGGAAATTGAAATCATCTTATCAACAAAGCTAATACCTTTT
CAGTCTAAAGCATGATCCAATCTCAAAGAAATTCGATGAAACGCCGATTAAACCACATTTATCTCCATCCTAACTAATAA
AGAAAGCTCCTAGATGCATTTTTGTTTTCACAGTTCTCTAAAGCTAAATCAATCTTCAAGTATCTTACAACACTTTCACA
GAGTTCATCTTAGAGTGTAACATCTCAGAAACTAATCAAGAAAAGTCACCTCAGCTAATTTGCAAACAGTGTAGTGACCA
TCCTTCCCCCAACAGAGAGCTCCATGGACAAGGTGTGTAAGCACGAGTACACTCACAATCCACAATCTCATTCTGAAACA
CAGAGCTTTCAATTTCTTAATAAATCACATAATTTACAGATCAAATCTCTAGCAGAACAAAGAGAACAACACGATTCAAG
CAAAAAAAAAAAAAAAAAAAGAGTCAAACGAATTACCTCAAAGAAAAGCTTTGATCTTTAGCTCTTTGCCAAAGCTTCTT
TTGATTTTTCTATTTCTCTAATCTATCCATTGACCATTTGGGGTGATGATATTCTTCAATTTATGTTGTTGTTTATTGCC
CATCCACAGACCCACGTTTGATTTGTTTAATCAAAATATATAAACTGACAGTTGTGCCACTAGTCACTTGCCAATTAAGC
ATTCCAAAGCTCCTTCCTTTACATTAGTATCAAGTGAGACTAGCACAAGCTTTTAAGTCCAGATAAAAAGCCCCATGGAA
GGGAAGCTTTCAAGAACGAGATTTAACCGTAAAACCCAATTTCGATTTCCGCTAATAATTTGGATCCAAAAATCTAGACA
AAATCTGATAAAATTAGACAAAGAAATGGATAAAACCCCAAAACCCATAATCGTCGTTGTTCTTGTTTGCTTCAATATCA
CTCTTTCCCCTCCAACGAGTTAGTTAGAGTGACGTGGCAGCTGAACTAGATTTGGAGTAACGGGATAGATTACCCATAAA
GCCCAATAATGATCATTACGTGAGACATAACTTGCTTAGATAACCTCATTTTATGGGCTTAGATGGGGTCTCTAGTGTTA
GTCATAAGCTCTTAAATACCATTTCTAGTTATATATCAATCTTTAGCTTGGAATTGGATCGTTGTCCTATAGTAAAAAAA
CTTTTACTATTTTATGTTAGCAATCCCACTTAACATTCAATATGTTTAAAATGAAAGAGTTTACCAAAAGGAAAGAAAAA
AAGGTTGGTAATGAATTTATCTAATCGGATACGATATTTCATAATCTAATGATGGGATCTATCAATAAATAGAATCAAAG
TTAACTTTAACGCTTTTGTTACCTGTTTTCTTTCTTTAGCAATTAATATTAAACGAGTTTTAGTAATATAAATATGTTTC
CAGTTATATACCAAACTTTATGTAATATTCATAAGCTTGCCAAAATTTACAAGAGTTTTTGGAACGCGCACAAAATTCTC
ATATATTTCTTACCCAAAAATAAATTTTTTTTTTTTTTTTACTTGTTTATAATCCTATATGAACATTGCTCATCTTCCCC
ATTTGATGGTAATTTTTCTATTCCTATATGTAATTAAATCCTAACTAATGAAATTGAAAACATAATTTGAAGATAATCAA
TCCTAATATCTCCCGTCTTAGATCTATTTAAATGGTCTTATTTAATTTCCTATATTTTGGCCTAATTATTTATTTGATAT
AGTGAATTTATGGAAGCTTCATGTTGATGGAATAAAACCGGCTTATCCCAATTAATCGATCGGGAGCTATAACACAAATC
GAAACTCTAGTAGCTATAAAGAGTGTGTAATAGCTTTGGATCACATGTATTACTATTTATTTACTAGCTCGTGCAACAAT
TGGCTTTGGGAAAAAATTTATTTACTAGTACTCCCCCTTCACAATGTGATGAGTCTCCAAATGATATATTCTCAACCCAA
AGGACAATCTGAAATTTTCAATATATATTCCATTTTATCCGCAACATTTGAAATTTGTGGCAATGTTTTTAAAAAGACTA
TTTATAAAGAATCTTTCTAAATTGTTTCTACGACAATCGATAACACCTTTTGTTGATCAACCCCACACAAGACTATGATT
CCAATCCTAAGAAACATACGACACGTGGATTTTTATGTCACACTAGTACGATGCGTCGATGCCTTCAGAGTACGAATATT
ATTCACATAAAATTCTTATTCGAATTTGATAATATAAGGTCAGCCAATCTTTTAAAGTAATTATATTCTTCAATATACGG
TTGTGGTCAAAATTCCATTTTATTTTGTAGCTTGCATGCACTACTAGTTTAAAACCATGCATGGATTTATTGCATATAAT
AACATTATATGAATTTTCAATTAAATTAATCCACACATTT