miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0003203
Located between position 8298812 and 8298968 on chromosome 04 strand -
mature miRNAs for MI0003203:
         osa-miR530-5p (MIMAT0006787): TGCATTTGCACCTGCACCTA
         osa-miR530-3p (MIMAT0002886): AGGTGCAGAGGCAGATGCAAC

References
[1]Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X, Plant Physiol. 139:296-305(2005)., "Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice"
[2]Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"




>promoter (3kb upstream pre-miRNA, by PMRD):
GAGAGGACTATGCTGGAAGTGAAGAAGGATCAGGCCGTAGAGACACTCCGGGGTCGTGAGGTGTGGTTCAACTCATATCT
AAAGAGTTGCTGCACGTCCATGTCCAGAGTCTGTAGAGACCTCCGAGTACCCCGTGGGGATCCTGAGGAATCGGCGGCCG
GATATATCTCGTGGCTGAATGGCGCCTGCACCCAGCTCGAAGGCATCGGTCAACGTATCGACGAAGCCTTGAAGCAGGAG
TGTCGTCGGTCAAGCCGATATGCCGGGGGGCATGTGTTGGCTTGCATACGAGATCATCGTCCGCAGCTGCACCTCGAGTT
CCTCCGCGAAGGGTTTTCTCGTTCTCGGAGAACTCCTACGGAGATAGATGGTCTAGCGAAGTCGATGGCGCTGCTGGCGG
AGAAGGTCTTCCAGTCAATCACTGGCGTTGGCCTTCCTGGTAGTCTCCGTGTCCTGTGACAAATGTCTTAGGGAAAAAGT
GTAATATAATTTTGGATTTTGATGGAAATGTAAGAAGTACTTGTGAAATAGAGAAGAAATCTATCTAACTAAGCTTTCTT
ACTCTGGATTTAGCGTGTATGAGTGTCTTCTCACTTCGCGACTTCAATTAGTCGTTTGTGTTATACACTCTCCCTAGCCC
CCAGCCTTGTCATCGGAGAATTCTTCTCGGGAGATAAGACTTTTGGACCTTTGACCTGCCTCGGTTGAACCAGCACTGAT
CCTAGCCCCCAGCCGTGAAGTTGGAAAATTTATTTCCGGTTACACGGCTTGGTTAATACGCACGGCGAGAACTCTTACAC
GACCAGATCTTACATGGTCTTTCGTCTCAACAGGATCCGACAAGGCCTTATCGGCTCTGGGCGTCCCCAGCCGAAGTTCC
CTTAGGTTCCTCGGAGGCCTTGTCAAGACGGCGTAAAGGGACATGAGGATAGGTTTCAACGCTAGGTGTCATTTGGGTAA
GGGATCATCGGGAAGGAACACTTTGATTGTGGTCTGGACCTGAAAAATAGGCTTTATTGAAGCTGTAAGATGTCTTACAA
GTATGGATACTATTGACTTATACATAGAATTTACGTAATTGATCAATGTTCCAGGAATTTGCCAACTCGCGACCATCGCC
GTCTGCAATTTTGAATGCACCTAGCCGCAGAACTTGTGTGATCGTGTACGGTCCTTCCCATTTGGGTGAGAGCTTGTTTC
GCCCTGCTTGGCTTTGAACCCATCGGAGGACGTAGTCGCCGATCGAAAGCGTGCGTGCTCGGATGCTTTTCTCGTGGTAA
CGGCGAAGGCCCTTTTGGTAGCTGGCTGCTCGAACAGCAATTCATTCACGATGTTCCTCGAGTAGATTTACATCGTCGTG
TCGCTGCTCCTCCTGATCCTCATTGGAATACTTCTGTACTCGTGTACTGTGATGTCGTAGCTCGGTGGGGAGCATGGCCT
CTGAGCCGTACATAAGGAAGAAGGGTGTCTACTTGTTGGACGTTGTCGGTGTGGTACGCACGACCCATAGTACTGATGGA
AGTTCCTCGACCCACTTCTTGTCATGTGACATGAGCCTGTCGTAGACGCGGGTCTTGATTCCTTGTAGTACTATGCCGTT
TGCCCTCTCGACTTGTCCATTGCTCTGAGGGTGAGAAACCGAGGCGAAGCAGATCTTGACTCCCAGCCTAATGCAGTAAT
CCTGGAAATCGGCACTGATGAACTGGGAGCCGTTGTCCGTTATGATACGGTGCGGCAATCCGAATCTGCAGAATATCCCT
TTGATGAATTTGATGGCATTGTCGGCCTTGATTTCCCCCGTGGGTGTCGCTTCAATCCGCTTAGTGAATTTGTCGATCGC
CACGAATAGGAACCTGTAGCCGCCCTGTCCTCGTGGGAATGGCCCGAGTATATCTAGCCCCCAGCACGAGAACGGCCAAG
TGAGAGGGATAGTCTGGAGTGCTTGCGGTGATAGCCTTGTGTGTTTACTGTGGAATTGATAGGCTTCACACCGCTGAACC
ATGTCCCAGGCGTCTTTGAGGGCGGATGGCCAGAAGAACCCTTGTCGAAAAGCTTTTCCGACTAATGTCCGATCGGCTGC
ATGTGACCCACAGATCCCTTCATATATGTGGAGGAGGAGATGTCTGCCGTCGTCGGAGAAGACGCATTTTAGGAGTACCC
CGTTTGGTGCCTTCTTGTATAGATCGTTGCCGATCATACAGTAGACTTTTGCTTTACGGGATATTTTCTTGGCTTCTGCG
TCGTCCTCGGGCAACTCTTCACTGCCTATGAATTTAATGAGTGGGGTGCGCCAGTCGTCTGTGGTCTCGATATCGGCAAC
GGCGTGTTCTGCCTCTGTAACCCCGAGCTGATGTTGGGGGCGACCGGGCTACCTTCGCCGCTTGCCTCTTTCACTGATGG
CCTTGTCAGGATGTCCAAAAAGGTGTCAGGTTCAAGTGGCTCTCGTCTGGACGCACGTTGTGCTAGATCATCCGGTTCGA
TGTTGTCTTTACGGTATACATGTCGGACCTCGATCCCATCGAACCTTTTTTCTAGCTTCCTGACTTCCGCGAGATACTTG
GATAACTCGGGGCTAGAGCACTTGTAATCTTTATGCACCTGGTTCGCGACTAGTTCGGAATCCCCTTTCACAATTAGTCG
CCTAACTCCGAGTGCAGCTGTAGCTCTTATCCCGGCGAGTAGTCCTTCGTACTCGGCTGTGTTATTGGTCGCCCTGAAGT
TGAGGTGAATTGCATGCTTGAATTGATCTCTCGAAGGTGATGTCAAGATGAATCCTGCCCCTGCTCCTTGGCTATTGAGT
GCGCCGTCGAACGCCATTGTCCACGTTTCGTTGTGGATTTGGTTATCTGACCTGTTATCAGGCATAGTCCAATCGGCTAC
GAAGTCGGCAAGTACAGCTGGGACTTGATGGCTGTTCGTGGCACAAAGCGGACATCAAACTGGCTTAGCTCGACTACCCA
TTTTGCAATGCGGCCGACAACGTCTTTGTTTCTCACTACT