| Basic information from miRBase |
| hairpin accession number: MI0001021 |
| Located between position 23345377 and 23345511 on chromosome 1 strand - |
| mature miRNAs for MI0001021: |
| ath-miR399b (MIMAT0000952): TGCCAAAGGAGAGTTGCCCTG |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis" |
| [3]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [4]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [5]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [6]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
ATTGGCAAAAAAACAATTTTGTGACTACTAAAGCAACTTGTCTTGGCTGCTTCTTTTTATCAATCATATATCATTGACTC
CACTAAGATCTAGTATTTATATAATATTTTGTGTAGGCCTTATTACCTTCATGCTAAGCTCGTGTCTTCTGATCTATTTG
TAATTATTTTAATCTATTTTTTTTCAGAGATTTAATCTGTATAAGAAGATCTCAAGATCAGCTTTTGTGTATTGAAGAAG
AACTAGGAAGAACGAGGATAGATACAGGTATTATTTTTATATATCAAGATCTCTGCTTTTGGCTTATTTGTTTATCATCT
TTTTCACTTGAAATGCACGAGTTTTAAAGTATAAATAAGCTTTGTGTTCTTGTTCTTGAGGCTTTGTGTTGTGTGAAGTA
GAAATAAGCTGAATTTGGATTTGATTTGATTTGGTATTAAATTGTCCTCACTGGTTTTGCGTGATTATATCATCTATGCA
CATGGCTTGTAGCGCTGACTTGCTTATAAGTATTTTTATAAAACGTGTTGCGTTCTTGTTTTGGCTTCTATAATTGTAGT
TTTAGAATTGTGCTTGAGCACTAATCAGATTCACAGCAATTCAAAAATCCATTTAGAGGTATAATTCCTTTTAGATGCTC
TTTGATCTTTTCGTGCTTGAGTCAGTTTGTACTTTTGTCCTTGACTCTTTCTAAAACAGGTTTTGTGTTAATCCCTTGAA
TCTGCTTTATCGCTTATGTCTCTTGAAATCTATCTATGTTGCTCTCTTTGTGACTGTCTGATCATTAGTTGCAAAATGTG
AAATTGTCTGTGTAATGATCAGGTCGAGTTTTATGAAATGTTGTTAGCTTCCATTGAGTAAGGCTTATTGTGGATTGGTG
GATTGAAATCTTCATGTAACTATAAGTATTGAGGAGCTTTGAATGTGGATTTAAAACTGTTCTGGAGTGTCATTGACTTT
GGATACTATTATTATGTATTTGTATTAAATTCATATTATGTATGCCACAGACCCATTCTCTATTTCCTTCAACAAGTTGA
CAGAGAGCAAAATCTTTATATACGTGATATCAAAGTGTTCTAATTTCCACATTCTTCTCACTTCTCAGGCTTTAATCTAA
ACTTTGCTCTCTGCTTTCTGCGATTAAAAGATGGTGGCTTTTGGGAAATACTTGCAGCGGAAACAAATCGAAGAATGGAG
TGGGTATGCATTTGCTTACGACATCTCGGTTCTAGCCATATCTTTTGATCATCTGATTTTTTTTTCCTAATGAAGTTTTG
ATAATTCCCTTGTAGCTATTATATCAATTACAAATTGATGAAGAAGAAAGTGAAGCAATATGCTGAACAAATCCAAGGCG
GATCTCAACATCCTCGCCATGTTCTCAAAGATTTCTCGAGGATGCTCGATACTCAGGTATGTTATAGATAATTGTCGAGA
TGATCTTGTTTGAGTATTATCCTCACTGAATTGTTATTTTCTGTGCATCTCCGAGGTTATATATGGCTACATACGAGTAA
TCTCAGTCCAGTGTTTGTCATTGTTTCTCTTAATTAGATAAGACATTTAAGAAATAAACCATTCTGATGATCAGATGGAA
CTCCTCTAAAATGTTGTTCGAGATATTGAAAGTGAATCATTGTTTGCAGATTGAGACAACTGTCCTTTTCATGTTGGAAC
AACAAGGGTTGCTTTCAGGGCGATTAGCCAAATTGAGGGAATCTCATGATGCTATACTTGAGCAGCCTGACATATCAAGA
ATTTTCGAGCTACGTGAAGCATACAGAGATGTTGGACGAGACCTTCTTCAGCTCCTGAAATTCGTTGAGTTGAACGCCAT
TGGTCTGCGCAAGATACTTAAGAAATTCGACAAAAGGTTTGGATATAGATTCGCTGATTATTACGTGAAGACCCGCGCTA
ATCACCCTTACTCTCAGCTTCAACAAGTTTTTAAGCATGTGGTAAATGAATTTTTCTTACCACCCTTTCACTGGTTTCAT
CTGTAGGCTCTTCTTGTTAGGAATCTTAAATGTTCTGTGTATGGAATTTGTAGGGTGTTGGAGCTGTTGTTGGAGCAATT
TCCCGCAATCTTCATGAGCTTCAAGAAAATGAAGGAAGCTTTTATTCAATTTATGACCAACCCGTTCTTCCGGCTCAGGT
ACTACATTTCAAATATATCAAATCAGAATCCTCTATACAGGCTTTGTAAATCCTAATCTTTTCCTCAAAACTCCACAGGA
TCCAGTGGTTGAGGCAATAAATAACGCGGTGGACAAGTTAACCTTCTCGACGAATTTCCTCAACTTCTTGGCACAACATG
CTCTTATCATGCAAGATGATTTGGTGACTCCTTCAGAGGATACAATCGATGAGCGGTCTTACCATTTTAATTCGTTACTC
CTGAATCTAGGAAACACATTTTTGTACATGGTCAACACTTATATCATCGTCCCTACAGCGGATGACTATTCGATGAGCCT
TGGAGCTGCAGCAACGGTTTGTGGTGTTGTCATCGGATCTATGGCTGTGGCTCAAGTATTTTCATCGGTTTATTTCAGCG
CATGGTCCAACAAATCTTACTTCAAACCTCTTGTGTTTAGCAGCATCGCACTCTTTATCGGAAATTTGATGTATGCGTTG
GCATATGATGCCAATTCCATAGCGCTTCTTTTACTCGGCCGTGTCTGTTGTGGGTGAGTTAAAAGTTCAATCATTTTCCT
ATATATCGTGTCAAAGAGGAAACCTTTTCCTCAACTGATTTCAACCCTTTAAATTTGCAGGTTGGGATCAGCAAGAGCTG
TTAACCGGAGATATATCAGCGATTGTGTGCCTTTGAGAATCCGAATGCAGGCATCGGCGGGTTTTGTGAGTGCAAGTGCT
CTTGGAATGGCTTGTGGCCCTGCGCTTGCCGGTTTACTCCAAATCAAATTCAAGTTTTACAAGTTTACATTTAACCAATC
TACTTTGCCGGGATGGGTTATGGCTGTGGCTTGGCTGTTC