| Basic information from miRBase |
| hairpin accession number: MI0001022 |
| Located between position 24962485 and 24962598 on chromosome 5 strand + |
| mature miRNAs for MI0001022: |
| ath-miR399c (MIMAT0000953): TGCCAAAGGAGAGTTGCCCTG |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis" |
| [3]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [4]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [5]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [6]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TAGATGGGATCACAGTGAAACCCAAATGACCGTTGTTTGGTCATCACTCTTATGAGTATTAATTAGTTTTACGTCTTTTA
TTTGCATATCGGTTCTATTCATACGGATACATATATTTATTATTCCTTAGATTCTATGTATATACAGTATAAGAATTTCA
GATAGCAGTGAAAGCAAAACAAAAATAGCCCATATATATAGTGTGCATACAAGAAAGAAAGAATGATATAGTTTGTACAA
TTTAAATTCATAAATGAAGAGAAGAGGCTGGACCATAACATGGTATTATTTAAGTGAATGTAGCCAATACAAATCACATG
AATTTTTTTTAGGTATGGTCATAGTACAATCCAAATTAAAGTTGTCCTTGTAATTAAAACAAAACTAAAAACAAAGAACA
GAGAAAAGGACTGATCTTTTTAAGAAATTGTGCTTAAAACAAACAAAACGAAGAAGAGACGAAAGAGCCAAAGAGGTATA
TTGTCTCTCCAGTCTCAAACTAATTAAGAAAGATCTCAGTTTACATTTCTGGATTTTTCTTCTATAAAACATTAATGCAA
CATCCTGCAAGTTTGCTATCACCTAAAAAGGGACCACAACTTCTAATACATATGGACCATTTTAGATATGTTTATGTCAA
GATTCCAAGTGGTAATCACAATTCAAACTACACCATTTATTGGTTATTTACTTATCTTCTAAGTCCAACATGAACGGATT
AGTATATTTATTTAATCTTTTCGGTATTCTCAATCTTAGTCATTGAGTTAATATTTGTTAACATGTATAGAGGATTGTGT
TTATTTAAAACTACTACTCTCAGTTTTGGTCCATTACTTAGTAAAAACAATAGTCATAATAACATGGTAAGATTGTTAAC
CTGTTTAGACGATGCAATAATCTCATTCGTTATTTAGTGATTTAAGACGTCATTGCTTGATAAGTCGAGATCATAAATCT
TTATCGTTGAAAATTTAAATGGTTATGACTTATATTTTAAAATTAGTTTGGACTTTTGATTCTGAAAACATGCAATAATT
GTTTGTGATACGTATGTATAATTAAATGCCAAGTGAGTGAATCGAAACTTTCGTAACAAACATAATGTTGTTGTATCATT
TTATTTTCCCGTATGGCAGAGTGGCAACATTAATGTGCTAAATCAAGTAGTAGCTTCTATAAGGAGTAGGTCCATATTCT
AATAATGAAATATAACTCTGAAAGTTTAAATAAATTTCATTTAAATGTCCCCTGTGAGTCTATGACTAAACTATTGTGCC
CACAAGCCGTTTCTTCCATATCAGTACCGAAATTTAATTTTCAAGACTTAGTTAGAACGACATAGGTACAACAACTAAAA
GAAGCTTTGTATTTCATTAAAACATTAGAGACCATTTCACGTTGTTTTAGTTCAAACTTTATTTTGAAGACGTATTTTTG
ATATTGAGAATTTGTTGAATACTATGTTGCAAACTCAACAAAATAGTTGATTTGAGACGACAAAAGCAGTAATAAATTTC
CAAGGTATTGACAACATGATCGGGTGACGAGTTTCCAAAATGTTTTGTTTTACTGAAATTGCTTGCTATAGGTTGGATCG
TTAGAAGTTTCTAAGAAAAGAACCAAAAATTCCAAGTTCTTTCTTTTCCAAACTACTGAGTCAGCTCCCAATTTGTTTTA
AGAACATGGTTAGGTCTCTCCTTTTGGCGGCAAAAAAAATATTAAAGAAAAACTTGATTAGATCAACATTGGTACAACAA
TTCAAATAGATGCCATGTGACACGGGCCTCTCATTACTAAGAGAGCTCTCAATAGTTGGGCCATCGTTGGGCTTACTTGT
GGCGGGGGCTCTATTTACCTCCACGTGCTACATTTTTGGTTGACAGTTTTCTACAATCAGATTTCACAGCTAAACATAGA
TGTGTTGGCCGACAAACCAAAACACGTTTATATGCGTTGTCCTTAAAAATACTTACGATAAGTTATCTCATTGCTTAGGC
GAAATTATCATTTTTGGATGGACAAATAAGTTTTCAGTTTTATGGGCCTTAATATATATTGGGCCTAAACTAAATATAGT
TATTAAGAGACAATTTTATGGGCCTAAGATTACACAATTTTATTATTTTATACAAAAAGTAAAAAAAAAAAAAAGTTACA
GAACAGAGAATATGAAGTTTTTGATGGAAAGAAACAGAGTTTTACGTTTAGAAGGATCTCTGATTTCAGCACCGTGAACA
TGGCCGCCGGTATAATGCTCCACCACTTCTACTCCTTTCTTCTTCATCAGCTTTGCCACATCTTTCTGCAGATCTATCAT
CGGATCATCCTCTCCTCCAATCATCATCACTTTCCATCTCAACCGTCCGATTTTTTCCAACTTCTCCGATCCATCTCCAA
CCGTCGGATTCGAATACTCATGATCTCGGTCAACGCCGACGGGAAGAGACAGATCCCACATTACATCGGTGACTATGGGA
GGACAAACCTGATCGTTCATAAGTCTAATCTCAGATTCACTTCGCTCTTCTCCGCCGAAGAATGGATGGTGTAGAATCAA
TCCACGGATCTGTAACGGACTCAGATCGGAGACGGAATCGACGGATCTTAGTCCGACGTTGTAAGCCAAATTCCCTCCGG
CGCTAGTTCCCATAAGAAACACATTTGAGAAATCGGCGTGAGATTTGATCCACTCATCGTCGGAGGTTTTAATCCAATCC
AACGCCTCAACTCCGTCGTCATACGCCGCCGGTAATCGATGCTCTGGAGCTAATCGGTACGAAGGAGATACGACGATGGC
GTTGAGATCACGAGCCACCTCGGAGCAGAAATCGTGGAAGAGTTGCATATCGACGCTGCAGAGGATGAATCCTCCGCCAT
GGTAATACACAACAATGGGGAGTTTCTGAGACGAAACGTTACCCTCGTTGACGGCGGAGGAGGGAAGGTAGAGACGGAGC
CACGTTGACTTTAATTGGTTAACGGGAAGATCTTTTGAAA