| Basic information from miRBase |
| hairpin accession number: MI0001023 |
| Located between position 14442978 and 14443077 on chromosome 2 strand - |
| mature miRNAs for MI0001023: |
| ath-miR399d (MIMAT0000954): TGCCAAAGGAGATTTGCCCCG |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [3]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [4]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [5]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TTCACATCATCATTCGGGACAGTAGAAGAGAGTTCGGATATACACTTCTTATCTTCGAATACTTCAAAGCTCGGAGAGCT
TTGTCTTTCAAAAACATCTCTTACAACACTCAAGAAACATTTTGTATCATCATCTTGCTTACCTACAAGATCCTCACATT
TCATTCGAAGTGCAGACTCATATGTGCTCCGCTGATTAACATTCTTCCTAGTGTCTTCTCTGTCACAAATCGTCTCAGCC
TCACCCAACATCTTCTCATAGGTTAGCATCTTCCGTCTCTTATCATAGTAGCTTTCCTTTTTCCTAATCACACACCGTAC
TATTCTCAAAGCTGCTAACCATAGCTTACTATTGTGTACGCCGTTTGCCATTTGAGACACAAATTCCCGATCGATTTCTG
GGCAGTCAAGAATCCAAGAGACGATTTTATCACCCTTAGGCATTACATCCTCAAAAATCCCTGTAGATTTATAATGCTCT
ACTGTCCCTATCTTATCCGATTCAAGCTCTTCTTCATACAGCAGTCTCTTGTCCAGAAGCAGATTATAAGTAGCTACTCC
CTCAAGGTCGATTCTTTCCTTGACCTGGGAATTTTCCCAAAACTGATTCACTACTTTTGGAACTAAACTCGCGCGAACAT
CTGTGGTGAGCTGTCTAAAATACTTGAGGATGTGTTCAAGGTGCTTAAGATCTAAGAAGCAGATGCATTGAGGGTTCTTA
AAGAAGCAACATTGATCAAGATAGATCCCAGGAACTCCAGGTAGTTCCAGATTCTCTTCTGTGTAATCTCTCAACCAGTC
CCAAAGGGTACATGAAAGAGTACAATTCTCCTTGGCACAAGAAGATTTTAGAACCTCGGCAAACTGTTTGAGTACGTTTT
CCCGCTCGCGATCTTTCGCTTCAGGCCAATCACTACACCACCCATTAACATAAACAAACTCTTCCCCGCGCTTAGCTCTA
TCCTTGATAAGATTTTCTGCCTCCGCTGTATCCACAGGCTTCCAATCCCCACAGCATATCATGTCAGCCAAAATCTCATC
CACACACTTAGGACGAGCACTAAAGTCAGGTTCAGAGTTGTGCACATGATTATCTAAGATGTGCATCTTGCAATCCGTAA
AACAGTAGTTAACCTGAGAACAAATGTGGCACTTCCAACATCTCCATCGAAGATTATTGGCGATGGGTATACATTTCTGA
AAGTGCTCTTTTACTTCCGTCCCATGCTTATCTTGTATATAGCCTATAAGCTTTTCAAAGTCTACTACCAAAAAGTTTAT
TTTGGTCTTGTCATCCAATTTAACCCAAATCTTCTTCAATCTATCAAAAGAAGTATCTTCTTCCCCAGGTTCTTTCTGAT
TATCCATAGTACCTATATCAGAAACAGCCACAGTCGCCTGCATCTTCGTTGTTGCAAGATCTATCCAATTCTGAAGTTCT
GTCTTTATCTTGGTAAAATAGCCACCATCCGTAGACTTTCCTTGAGGTGACGTTATGGACATTCCCAGCTTTGCTTTGGA
CACAGCTTTCTCATAAAACTTGTTTATCCGAAGCTGATCACCCAACTTGATTAGCGAACGAGCATAGCCACGAAAGGACC
TCAAAGTCAAAGCGTTAGGAGACAGAAGAGTAGCCATTGAATACGCATCGACAGAAGCAAACAAGTATAAGCATTTGAGG
TCGGTGTCATCTGTTTTCTTCGCTTGGGCATAGAAGATATCACCTTGCAGTTCGTGGTGACTAGAGCACTTTTCGTGATT
CCCATGATCAGAAATCGTTTTCTCTGTTAATTTCAAAGCCGAAATGCCGTCACGTTCGAGCCAGAAGTCTCTAGCAAGTT
CGGCTGCATCGTCGATCTTCCATTTTGTTTCACTTTCGTCTGTACTCTTCATCATCATCGTATCCAAGGGAGTCAGAATT
TTCTCGAGAAAATGGTGGTGGTTTCTTTGTCTTTCATGAGAGACTGAGAAAGAAAAGAGAAAAAAAGTATCAGCTTTTCT
TGGGAGAGTACTGTTCTGTTTACGAGAAGAAAACAGAGTAGAGACGTTTTATGTAACTTGAGCCAGAAGGAAGAGATAAA
GAAACGGTCAGGTGCATGGCACGTGATCTTCTTCATTGGGGAAATAATAATTTCACTTTTTATTTTTAGAAGTGAAGTCT
CACTGGGACATTTCGTCGAGCACCTAGTGTGCACTCCAGGGTTCGTAGATTGGTCTGACTTTGATCGCTACTCTCACCAT
TCTCTTGCTGCAAACACACATAGTAGAATGTACAAACAATGATAAGGTTTTACATTGAACGAATTGAGAAGAAATTATGT
TGACGTTTTTCTTATAAAGACCTTCGTTTAGGAGAAGAGACCATGGATTTCATTTCTAGAGCTCACTTCATCTATGTATC
CTATGTTTATATAGTAATGTACAACAATAGAAATATTGTGTGATCGTGATCTTCTTTGGAAGATTTATATGTAGATAGAC
GAGAGAAAATGGAGAAAGAAGAAGAGTCGTTTATGAAAGATTACGTCAAACCATATATGTTAATAAAGTTGCAAAGTCAC
AAAGAATTAAATAAATCTCAAGAATGTTATGTAAAGAGTAATTAATTAGCAAAATATAAACGATCCTAATGGGGTCACTC
ATGAACTAACTTGGCTAATATAGTCAGCTTCAATATCTTGATATCGAGACTTTCATCTAGCTTAACTATACCGTCCTGAC
CGTCCTCACCAATGACCTTAGCTGTTGAACCACAATACTTGCCTCCAAGAATCTTCACACGTTCGTTCTTCTTCGGACAA
ACTAGGCTCACTTTGTTCTGTGTCGCTCTTATCGTCTCGCCTTCACCTCTGTGTCCAAGTGCGACTACACAGGAGCCATC
CTGATGATGACCACAAAGGAAAAAGAGGCTTACATAATCAGTAAACTGGAAAATGTTTACTCCAATACAACATTCTTCTG
TGTAGTTTAAAGAGGACAAACCGGAAGAACATCTCGAATA