| Basic information from miRBase |
| hairpin accession number: MI0001025 |
| Located between position 14444997 and 14445114 on chromosome 2 strand + |
| mature miRNAs for MI0001025: |
| ath-miR399f (MIMAT0000956): TGCCAAAGGAGATTTGCCCGG |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis" |
| [3]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [4]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [5]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
GGTGACGATCATTTGGTAGGTACTTATGTCAAAATTCGTCTGGGGCCTTTCAAGGGATATAGTGGGCGTTTAGTTGAAGT
CAAAGATAAGCTAGTGCGTGTGGAACTTGAGGCCAAGATTGTGACAGGCAAGCTCCACTGTAATTTCACTTCTATTCACA
GCTGGTTGCTGAATGTTGAATGAATTCTAACTCTTTTTGTATGAACAGTTGAGCGGAAGGCGATATCAGATATGACTGAT
AATGTAGTCGCAACCCCGCAGTATAATATGGGAAGCCAAACTCCTATGCATCCTTCCCGGACTCCACTTCATCCCTGTAT
GACTCCAATGCGGCATTCTGGAGGTTTGTCACCTTAATTTCGCAGTTTCAAGATCCAATCATTTGTTTGTGTTTTTGTTT
CTCATTTGACAACATGTTTGATATGTTTATGTAAAAAATTCAGCTACACCTATCCATGATGGAATGAGGACACCTATGCG
TGGTAGAGCTTGGAATCCTTACATGCCTATGAGTCCTCCTAGGTACTTTAACATGGCCACTCTTCATTTATTCCCATAAA
TATTTCACATTCTGAGCAAGTGTCTCAAACCAAAATATGGTTGTTGTGTCTCAGGGATAACTGGGAAGATGGGAACCCGG
GATCATGGGGAACAAGTCCATATGAAGCAGCTACGCCTGGATCAGATTGGGGTAGTAGTACTCCTGGTCGTAGTAGTTAC
AGAGATGCCGGAACACCAATAAACAATGGTTTTGTCTACTACCTTTTATGCCTTAACGGTTTCTTGCTTTGACGAATCTT
ATTCTCACACACTTTTCTCATGCAGCTAATGCCCCAAGTCCTATGACACCAAGCTCAACTTCCTACTTACCTACCACACC
CGGAGGACAAGCAATGACTCCTGGAACCGATCTCGATGTCATGTCTCTTGATATAGGTGCCTGCCTATCTCTTAGTTTTA
TACCATTGGTGTTTTTGATTCTCATATTCTTAACTCTACCAGGTGGAGATGCAGAAACCAGGTTCATACCCGGTATATTG
GTCAATGTACACAAAGCTGGAGAGGATAGAAATCCCGGTGTTATTCGAGATGTTCTTCCGGTTTGTCCTCTTTAAACTAC
ACAGAAGAATGTTGTATTGGAGTAAACATTTTCCAGTTTACTGATTATGTAAGCCTCTTTTTCCTTTGTGGTCATCATCA
GGATGGCTCCTGTGTAGTCGCACTTGGACACAGAGGTGAAGGCGAGACGATAAGAGCGACACAGAACAAAGTGAGCCTAG
TTTGTCCGAAGAAGAACGAACGTGTGAAGATTCTTGGAGGCAAGTATTGTGGTTCAACAGCTAAGGTCATTGGTGAGGAC
GGTCAGGACGGTATAGTTAAGCTAGATGAAAGTCTCGATATCAAGATATTGAAGCTGACTATATTAGCCAAGTTAGTTCA
TGAGTGACCCCATTAGGATCGTTTATATTTTGCTAATTAATTACTCTTTACATAACATTCTTGAGATTTATTTAATTCTT
TGTGACTTTGCAACTTTATTAACATATATGGTTTGACGTAATCTTTCATAAACGACTCTTCTTCTTTCTCCATTTTCTCT
CGTCTATCTACATATAAATCTTCCAAAGAAGATCACGATCACACAATATTTCTATTGTTGTACATTACTATATAAACATA
GGATACATAGATGAAGTGAGCTCTAGAAATGAAATCCATGGTCTCTTCTCCTAAACGAAGGTCTTTATAAGAAAAACGTC
AACATAATTTCTTCTCAATTCGTTCAATGTAAAACCTTATCATTGTTTGTACATTCTACTATGTGTGTTTGCAGCAAGAG
AATGGTGAGAGTAGCGATCAAAGTCAGACCAATCTACGAACCCTGGAGTGCACACTAGGTGCTCGACGAAATGTCCCAGT
GAGACTTCACTTCTAAAAATAAAAAGTGAAATTATTATTTCCCCAATGAAGAAGATCACGTGCCATGCACCTGACCGTTT
CTTTATCTCTTCCTTCTGGCTCAAGTTACATAAAACGTCTCTACTCTGTTTTCTTCTCGTAAACAGAACAGTACTCTCCC
AAGAAAAGCTGATACTTTTTTTCTCTTTTCTTTCTCAGTCTCTCATGAAAGACAAAGAAACCACCACCATTTTCTCGAGA
AAATTCTGACTCCCTTGGATACGATGATGATGAAGAGTACAGACGAAAGTGAAACAAAATGGAAGATCGACGATGCAGCC
GAACTTGCTAGAGACTTCTGGCTCGAACGTGACGGCATTTCGGCTTTGAAATTAACAGAGAAAACGATTTCTGATCATGG
GAATCACGAAAAGTGCTCTAGTCACCACGAACTGCAAGGTGATATCTTCTATGCCCAAGCGAAGAAAACAGATGACACCG
ACCTCAAATGCTTATACTTGTTTGCTTCTGTCGATGCGTATTCAATGGCTACTCTTCTGTCTCCTAACGCTTTGACTTTG
AGGTCCTTTCGTGGCTATGCTCGTTCGCTAATCAAGTTGGGTGATCAGCTTCGGATAAACAAGTTTTATGAGAAAGCTGT
GTCCAAAGCAAAGCTGGGAATGTCCATAACGTCACCTCAAGGAAAGTCTACGGATGGTGGCTATTTTACCAAGATAAAGA
CAGAACTTCAGAATTGGATAGATCTTGCAACAACGAAGATGCAGGCGACTGTGGCTGTTTCTGATATAGGTACTATGGAT
AATCAGAAAGAACCTGGGGAAGAAGATACTTCTTTTGATAGATTGAAGAAGATTTGGGTTAAATTGGATGACAAGACCAA
AATAAACTTTTTGGTAGTAGACTTTGAAAAGCTTATAGGCTATATACAAGATAAGCATGGGACGGAAGTAAAAGAGCACT
TTCAGAAATGTATACCCATCGCCAATAATCTTCGATGGAGATGTTGGAAGTGCCACATTTGTTCTCAGGTTAACTACTGT
TTTACGGATTGCAAGATGCACATCTTAGATAATCATGTGC