| Basic information from miRBase |
| hairpin accession number: MI0001020 |
| Located between position 10227073 and 10227195 on chromosome 1 strand + |
| mature miRNAs for MI0001020: |
| ath-miR399a (MIMAT0000951): TGCCAAAGGAGATTTGCCCTG |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [3]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [4]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
ATTTAATGAACTCAGTTACATAGTTTAAAAACCATACATATTAGATTTGATATATAAACAAGATCATAAAGAATAAACAT
TACCCATTCCTAGTGCAGACAATTCGACATCAGTGTACTGCTGCATGTACCTCTGTTAACAAAACACCAAACATGGTCAA
TAACATAAACAGGTTTAATCAAATCTAAAGAGCAAAACAAAGTTCACAAATCTAAGGAACAAACATTGATAAAGAGTCAC
ATAAACAACACAGAACCACCAGTAATAACTCATCAAAGTCAATAACAGATAAATTAACACTCATGAACAATCACAGACAT
TTCCAGACTTGGTACTCAAATAAGAACACTTCGAATCCATAGATTTCAATCTAAATACGAATTTATTAAGATTCGATTAA
AAGGGTTTCGTTACCTTGGCGAGATTGACGTAGAAGAACAATGGTTTCTTAGTGTTGGAAACTTGAATCCGATTCTTCTT
CTGGGTATCAACAGCCAAGTTCATGTTGTTAACTCCTTCCGTGATCTCTTCCATTGAATCTAACTCAGAAAAATTAAAAC
TTCTCCTCTCGAATTTAGATTTCTCTCTCACTTTTATCTCAGAAAACGAATGAAATTGAAGAGACAGAGAGACGACGATG
AAGCTTGAACCAAACCCCCAAAAAACCCTAACTTGAAATGCCAAACGACATCGTTTTAACACAACCTACACAAATGGGCT
AGGCTCCAGCCCAATAGGCCCAATTGGGGGGAAAATTAATTCTGCGATGAGCAAAATCGGCGTTATCCGATCAGATCGTT
GAATTGAATCTTCGAGAAGACTCTTCTTTTGATTCAATCACTCACCGGAGAAGAAGAAGAAGCTATGCCGGTGTTCAAAG
CTCCGTTCAATGGCTACTCTGTGAAATTCAGTCCATTCTACGAGTCACGCCTCGCCGTCGCTACAGCTCAGAACTTCGGA
ATTCTCGGAAACGGCCGAATCCATGTCCTCGAGCTCGCTCCTGGAGCTCCAGGCGTAACTGAATCCGTCTCGTACGATAC
AGCCGACGCTGTATACGACGTATGTTGGTCAGAATCTCATGACTCTGTGCTCATCGCCGCAATTGGTGACGGCTCAGTGA
AGATTTACGACACAGCTCTTCCTCCTCCTTCTAATCCGATTAGATCATTCCAAGAGCACGCGCGTGAGGTTCAATCTGTG
GATTACAATCCCACGCGGCGCGATTCGTTTCTCACTTCTTCGTGGGATGATACGGTTAAGCTTTGGGCTATGGATCGTCC
GGCGAGTGTAAGGACTTTTAAGGAACATGCTTATTGCGTTTATCAAGCAGTTTGGAATCCTAAACATGGTGATGTGTTTG
CTTCTGCTTCTGGAGATTGTACTTTAAGGATTTGGGATGTTAGAGAACCTGGATCAACTATGATCATCCCTGCTCATGAT
TTTGAGATTTTGTCTTGTGATTGGAATAAGTATGATGATTGTATTTTAGCTACTTCTTCAGTGGATAAGACAGTTAAGGT
TTGGGATGTTAGGAGTTATAGAGTTCCTTTGGCTGTGCTTAATGGTCATGGATATGCGGTGAGGAAGGTGAAATTCTCGC
CGCATAGGAGGAGTTTGATAGCTTCTTGCTCTTATGATATGAGTGTTTGTCTTTGGGACTATATGGTGGAAGATGCTTTG
GTTGGTAGGTATGATCATCATACAGAGTTTGCTGTTGGGATCGATATGAGTGTTCTTGTTGAAGGTTTAATGGCGAGTAC
TGGTTGGGATGAGCTTGTTTATGTTTGGCAGCAAGGGATGGATCCTAGAGCCAGTTGATTCATAAGTAAGTTTGTGATTG
CAAAACAGTTTCATCTTTATTTGTTGTGGAATTGGTTTGGTTTTTGTTAAAGGAATGTAGTTGGAATAAAGTTGGGATCT
TGCTTAAGAAGAAATGTAAGTTACTGAGAGTTTCACATATGAACAAGGTTATCTTTCGAATTGTGATTGATGGTAATAGT
AGATAGATTGCTTATGTTCTAGTGTATATGTTAACCTGTTACAATGAGACCTGATTAACATATATATTAGGACTAAGATA
TATGTTAATCTTCTATAATGTCCAAAGTAATGACATAATATATATAAAGTCAATTACTTTAGGGTAATGTACCTTTTATA
GTATACTGTAGAATTCGAATTTTGTTCTTTTTCATAGTTGATTGACTTTATTGAGTGGCATAAATGTACATATTTATAAC
TTTCTAGAGCATATTGCAGTTTCGAGCTTTTGCATTTTATGCGTCTTCAGGTAGAAGCTTATTAAAATCACAAGAACATT
CTTACGGATCTTCCATTTCAAGAATCACTTTCTACTTATTACTTTACTATTATACCACTCTCTTTTTTATCTTATTCCAT
AGTATTAAAGATTCTTTTATTTTCTTATGATTTTTTTTTTAATATAGTACTCCGATCCCAAACAAAAGATCTCAAAACAC
ATTTTGTCAAGTCACAAGACTCACAACCGTCTCAACTTTTGGACTAAATTCAAATCAGACAAATAATTGGGTTAAACATA
TGAAAGGGCTTGACATTATATCATATAGTATTAAAGTGAACTATAATATTGCTTTATCCACGAGGTCAAGAACATACTAT
ATGTAATAGACACACATTAGTATTGACTTTTTATGTTAAAACTAGAGATTAAATTTTGTGAATTTAAATGACACATGTAC
GATCTTTTACTTTTGTTGTGATGCACGCGGAAGATGTTGCGAAGGATTAGAAATTGTTAAAAGAGAAGAAGGTGGTAGAC
TGCTCTTCATTTAGGAATATTTCTGACCATAAAACTTGTGGCATGGAAGATTATTCCTAAGAAATTATACGAAGAAGAGA
TCATTGTCGGAATAAAACATCGGTCTTATTTACAATGCAGTAGCATTGTACCGTGGAATATGCTTCTTTCCAAGTTTATA
TAACATCAAATTTGCAAGTTACAATTGTGAACATGTGAGA