| Basic information from miRBase |
| hairpin accession number: MI0002205 |
| Located between position 167623 and 167722 on chromosome scaffold_6 strand + |
| mature miRNAs for MI0002205: |
| ptc-miR160e (MIMAT0001911): TGCCTGGCTCCCTGAATGCCA |
| References |
| [1]Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" |
| [2]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" |
>promoter (3kb upstream pre-miRNA, by PMRD):
GGCATTTCTGTGATCCGTACTTGTTCGGTGCATAAATGCTAGCCAGCCAGCCAGTATAAAATCAACATGTGCATCGAAGA
ATACTGGTGCTGGTTCTGGCTGGCTCCCTTTTCCGGGGTCCAGTGGTCAGCCGAGTACTGGCCACTCCAAGTTAAGTTCA
ATAGTCAAAGTGGTTCTCCCTTAGCAGGCTTTAGCTCCCTTTTCCTCTCCCTCCCTTCCTTGCATGTCATAAATGGACCC
CTCCTCCTGTGTTCATAAGGATCCAAAACATAGCGTGAATGAAATGGAAGAAGAGGATTCTATATATTTTATCTTAGCTG
CAGGCTACTTACTTTTTTGAAATTCATTTATACATATACAATAAAAATTATGTATCAGTATGATATATATATACACACAC
TACATATCAAGAGAATAACATGCATGGAGGTTGATGATACGGCATGAGACAACAACCTCCATATATATTATTCTCTTCAT
ATATAGTATTTCATGCTCATACATAATTTTTATTGTTTTTTGTTAAATGAAATTGTCCATATATATTATATAGAGGGAAT
TAAATCCTGTAGTGAGGACACAACCACAACTACCACCCTGCTACAGTTTGTCTTATTTACTGGTTTTGGTTTGGCCTCCT
CTAGGAATTATCAAAATCTTTATCCCTCGACCCCAATATTAAATTAACATAGCTACCTACCTCTATATGAATCCAATCAA
TACTTCGTTGCATTAATTAATTGTATAAAAAGCAATTATATATATATATATATATATATATATATGATAAATCTAAATTT
TAAAAACTCACGGTTTTACAAAATATATTCGACACTAGCTAATTCAAATAGTCACCATCTTGAGAAGAGCCCAACTCTTA
TGGAATCGAACTAGAAAAAGAGTTCCTAGAGACTCGGCTACATTTTAGATCAAACTTTTTTTATACCTTTAGGTGTATAA
AAGTATTTTATTGATTTATCATATTTCATTTACATTAATGTTGTATAAGGGATAGTATACAAAAAATATTTTAATGACCT
ACTATATTTTCATCGCATTAATATTTGTGTAATGAATATTTATCCCTTATTAATACATATGTCAGGAATGTTTTCCCTCA
CTAATGCTATCAAAAGAAAATTACATTCTAATTATCTTCTCTACAAAAAAACAAGACTTGTGAGCTATATAATATCCCAT
AAATTCTTCAACCTATATGTTCACAATCTTCATTATTATCAAAGTTTCTCTCTAAAATATCATTGGTTTTCTCTAAAAAA
GATAGTTACTTAAGCATTTGAGAGTTCTTAAATCCACCAAATAGAATTTTTATAGGTATCATCCATTTTGATTTACAATA
TACCAACCACCAGCCAACTTGGTTAGAAAAAATGCATCAGATTACTAGAATTACCAGACTAATCAATTATCCAACATATA
AATTTTATTTAGACTACTTAGATTTTTTAGAACATCTCTAGTAAAGTGAAGCTTATTCTTAATATATATATATATATATA
TATATATATATATATATATATATATATATATAAAGATTTGGTCAACAATGAAGCTTTTTTTTTTAATTCAGCTTATTTTT
TTAATTTTCTCTTTTCATTTTGTTATTTTTTCATTTATTTCATCCTAAAGTCTTTTTGTATAATTATTAAGGTAATCTTT
AATTAGACCAGCAACCTAATTAGTTCAAGTCAAGATAATTTCTCTATCCTAAACATTTTTTTGTTGTATTTAAATAAATT
TTTATTTGACCACACAATATAGCTCATAAACTATAAATTACTAAAACTAATATATTCTAAGAGAATGTAACTGTTATATA
TTTTGTATTTTGATACTGTCATTTTTTCTTACAAAAATTAACAAAGACAAATCAAAGAAGACAGGAGTAGTTAATATTCT
TTGAAACAGTTGTGATGCAATAAATCCAATCTTTTGTATATGTTTGATATTATAATATCAATAGGATGTTTTTGAAAAGT
ATTTTTTGTTTAAAATATATTAAGATAATTTTTTATTTTTAAAATCATTATATTAAAAATATTTGAAAACATTAATAAAA
AAATAATTATTATTTTTATTTTTAAAATCATCATATTAAAAATATCTAAAAACATTAATAAAAAAACATCAAACTAAACA
TTTTTTTTAAACGCATCTAAATAAAATTGCTAACACAGAAATAAAGAATGCCCACGTCCAAAAAGAAAGAGACTGAAAAA
AGAGCAACCATGCACATACAACTTGAATTAATTAATCAAAAGAAATCATAATATTATGGAGATAATGAAAAGGAAAGTGG
TGGGGGACGATCACCTTTTCCAAGGAAAGAAAATCCAAGCAAAGTTACCTGTAAAACCCAGGCAGCTTTGGCTGTATCTA
TGGAGCTATTTGCTACCTAAAATCCGTTGCTGCCGCCTTCTCTACCACCTGTATTTCCCCCTCTTCATGGATTTTCTTCT
GTCTTCTGTCTCCTCCCTCTTGTTTTTCTTCTCCCTCCTTACCAACCCCTTTAAATCCCCCACTTCCACGTACTATTCTT
TGCTTGCAATCAAAGTTAGAGTGATCGTTCTATACAAATCAAGAGAGAAAGATGAGGTAGTGAGAATTGTTCTCTCAATT
ATTTGCTCACCTCCCAGTCTTTCTGTCATATATATCATCTCTTCAACTGTAAGTGTCTTAGTTTACACCTCCTGGTGTTT
TAGCAATGGCATTTTCTCTGCTTGTTAATTGCTCTTAATCAAGTAATCATGAATCGACCAAATTTTCTTGAACACCATGT
CTTCTAACTCTAGTCTTTCAAATTAAGGAGTCGCTTGAGAAAAGCATCATTTATTCGTGTCACTAGTCAATTGAAGCATA
CGTCATAGAGGTTAATTAAGATCACATGGTGTCTATGGCAATGCAGGGCATTTGTTAGATTGTGTACTTTGTTTGCAGGT
TGAGAGCACTTACTACTATAGCAAGAGCTGCTTGGTCTGA