| Basic information from miRBase |
| hairpin accession number: MI0002206 |
| Located between position 120174 and 120273 on chromosome scaffold_16 strand + |
| mature miRNAs for MI0002206: |
| ptc-miR160f (MIMAT0001912): TGCCTGGCTCCCTGAATGCCA |
| References |
| [1]Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" |
| [2]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" |
>promoter (3kb upstream pre-miRNA, by PMRD):
CCCCCTAGACTTAGAAGCAGCCCCCTCTCGCCTCTTGATCCTATGATGAATCCGGGTGTAGAGGATCTTGCTAGGCTTGG
GTGTGAGAGGATGTTGATCTTTGTAGCTGAGGAAGACTATTTGACTGTTGCAGCTAGGAATTATTATGAGAAGTTGAAAA
GGAGTGGATGGAAGGGAACTGTTGAACTTGTCGAAAATGAAAAGGAAGACCACTGCTTCCATTTGCTTCTGGGTATTCTT
TAAAATGCAGGGGAGATAAGATTTATCTGTATAAGAAGATTTGGGGTTTTGATTTTAAAAAATCAGGTTTGGATTTTTGG
CATTTGGGTATTTGAAAAATATAGGAAAAACCATGTTTATTTTGCAAGAAATTTAGGGTTTTGATTTATAGCAGAGTTTT
GGATTTGGGATGTTGATTTTATTTTTATTTTTTAATTGAAATCAGTGTTGTTGATTTTTAGCTTTTGGTTGTTTGCAGTT
TGCACAATGCAGGGAAAACAATATTTGTGAAAAGGCTACTGGCAAGTTTGAGAAGAAATATGAGCGTATAGACTTTCTTA
GTTTTTTGAAATCAAGAACCGAACCAAAACCGGTCGGTTTGACTCGATTTCGGTTTAGTTTTAGTTTTTTTTCAAAAAAA
ACTAATTTTATTATTTTTTATAGGTAAAAACTAAACCGAATAAAAAATATCACACCTACTCTTAAAGACGCCAAATTTCC
TTCCAAACAAGAGTGACTTGTGAAAGGATTCAAGTAATCAACATCTTCCGGCTATGGAAAATCACAAAATCCAAGGAGGC
AACAGGCTCAGAAGTCAGAAGCTGTATCATCTCGTGACAAATCTGACTGGTTTGGTGCGATATCTTCCAGCAGGTCAACC
AAAGGGCCCATTGGCCTCCTATTCTGCAGTTTGCTGTGTCTTCAAAGTTAGCATCAAACATCGCATGACATGAAGGACAC
TCGAAATACGAAAAAGTGCAATCCCACACTCATTTGCTCGTCAACAAGTGGGGAAACTCTGGTAGACAATAATTTCTCGT
ATAAAAAATAATTCAACAGAGTCAAATCACCTCTTAAGATGTTCTTTTTTCTGGGAGGGCATCTATACCCAGTCCCACTC
TTATCTTGGTTATGTGACAGACTAGCCCGCCTTATCACTTTCAACCTGATCAGTCCATCGACTTTATGGCTCTCCCAACT
GCCTTGGCACATCAGTGGACCCGATATCTAGATAGGATACCGCCATGAATTGGGGGAAAAAACGAATCAAATTAATGGGA
TATATGTTTGTTTTACATCTTACTCTCTCTTCAATCATTGAGTTCACAGTACACCATCATCACCCACCTTGTTAATTATC
CATGAAAAAGCTTTGCTTTTGTGGTTTAGAACACACCTTCATTCTGTGTTTTGAAAAATACTCTTACCAATATGTAAACA
TCTCGACATCGACTTGTTTAGGCTAATCATTCTTCATAGCAAGGACCAGACTTTTTCTTGCAACTGATCAGTTCTGTCTT
GGTGCATAAATGCTAGCTCGTAAAAAATCAACATGTGCATCCAAGAGTATCGGTATAGCTAGAAGGGGTGGAGCATGCTA
CTATTGGTCTAGGGCTCAAGAGTGTCCCGTGGATCCAGCCGACTGCCCACTCACAGTTGAGTTCAGTGGTTAAAAGTGAT
TCTCCCTTGGCAAAGCAGGCTCTAGCTTCTTTCTAGTTCCTCATCTCCTCTCCCTTGCATATACTATATGGGGCCTTCCA
GTTCTAAGAAGATCCAAAACATAGCATTCGTTTTTCATCTTAACTGCAGGCTAATTGACTATTTCAAATTGATACATAGA
TAATCCATGCATCTTGTGATATATATATGGCATTAGACTACAATAAGCTCCATTGCTCTCTTAACATAAACAATTATCTC
CAACACAGAATGATTATTTTTTTGTTAAATTAAAACCTCTAGCGAGGACATGACCACAACTAAGGCACCCCTGCAACACT
TTGTCTTGTTTACTTGTTTTGGCTGGCTTCCTCTAGGAATTATCAAAATCCATTATCCTCTACACCAATCCAAACATTAA
AATAACATAGTACGTTGTGTGATTTTCAATTCCTTACAAAAAATAAAATAAAATTAAGTAGCTAGGACAGATGAAATGAG
TTGATAATACTCTTGAAACAGTTGTATGCAATAAAATGCAATCCTACGTATGCAATAAAAGGAAAGAGAATCAGAGAGAG
AGAGAGAGACCATGCACACACGACTTGAATTAATTGGGAAGGGAAGAATGAAAAGGAAGTGGTGGGTGGGAAAATCATCT
TTTCCAAGGAAAGAAAATCCAAACAAAGTTACCTGTAAAACCCAGGTAGCTTTGGCTGTATCTATGGAGCTGTATGTTAC
CTAAAAGCCGCTGCTGCCGCCTTCTCTACCACCTTTCTTTCTCCTGAAGAATCTTCTTCTGTCTTCTGTCTTTCTTCTTC
CTCCACAACCCCTTTAAACCCCACACCCCCCCTCCTCTACGTGCTATTCTTTGCTTGCAATCAAAGCCTGAAACAATATT
CATACAGACACCACACATACAGGGAGAGAAAGAGAGAGGTAGATTAATGGTTGATCTCCCAGTTATTTGCTCATCTTCCA
GTCTTGTGTCATATCTTCTCTTCAAGCACTGTAAGTGTCTAAATATTTCTGTGATTGAATGTTGGTTTATAAGCTTCCAT
ATTATTACAATTATCTAATACAATCAAGAATCAATCAACTTTTCTTGAACATCATTATATATCTAAGTCTAGACTTTTAA
ATTATGGAGCTGCTTAAGAAAAAAAGTTTCTATATTTCGTTAATCAGTTAAGTGTTTATAGATGATAGTAATTAATTGAG
ATCACAAGGTATGTATATATGGCATTGATGCAAGGCATTTATTAGATTGTGTACTAATTTTTTGCAGGTTAAGATGCTCG
AGACTGCTTACTACCAGCTAGAGCTAGCTACTCGGTCTGA