miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0000192
Located between position 19009094 and 19009182 on chromosome 5 strand -
mature miRNAs for MI0000192:
         ath-miR160c (MIMAT0000180): TGCCTGGCTCCCTGTATGCCA
You can find this miRNA in EMBL: (accession: AJ493634)

References
[1]Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
[2]Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP, Cell. 110:513-520(2002)., "Prediction of plant microRNA targets"
[3]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes"
[4]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
[5]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[6]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"




>promoter (3kb upstream pre-miRNA, by PMRD):
TACTACCATCGATCTAGCAGTTGGGTAGCTACATCGAAAATCATGCTTAGCCAAACAGATTTCTAAAACCATAATTACAC
AAGCATGGGATATAGGTATCCAAATTTCATCAGAAAAGAGAGTAACCTCCAGCCTTTACCGTAACAAAAACGAGGATGTG
TTTGGAGAAACATTGAACTGAGGACACTCAACACTTCTCTTAGATATTTTATGGCAGAGGAGTAGATAGCCAAGCCAATT
AAATAACCAAATTCGCCAAAAAACAAAAATTAACGATTCCACAGCACAATTATAACCTGGCATAAGTTGAAATATATTAC
ATGTGACTTCCAGAAATTAACCATTCCACATCACAATTATAAGAAACATCTTTTTTTTTTGGTTTCACCGATATTACCAT
ATTCTTTTGATTGTCTTGTCGTTGTGTTGTACAATTTCCATTCCGACAATAGTGGAAAAGAAAAATTGTAAGTCTGTGAC
GTCTACTGTGACTAGTGACTACATCCAAAAAAAATTAGAGTCACTTCAAAGCTTATATAATTTAGGCATTACAATCTGAT
TGTCCATCCCTACATATTTTTTGATTTTTTTCCTCAAACATAAATACAAGAAAATAAAATTGTATTACTAAAAGTACACT
TATGTAACTTTATCGGTATAGGAAATTTTACAAAAAGAATGCATCTTAAAATCTCATATTCAAAAGTTGTGCTATTAGGG
AGGAAGCTAATCTAACTCCCTTTGATCTCCGTCCGTGGGAAGTATAACCTAAAAATTCATAATTTTTTGGGGAGAAAAAT
AAAAAGAACAAGTACAATTTTATTAGTTAAAATAATTTATATGGACTTTTTCCGCGATGATGCATGTTGTTTTGAAAGTT
GATCTCACCAAGATCACTAGGAACCGTGGAAATCGGAGCGGAAACCGTTGTTCAAATTTATCGTTTCTTTTGCTCTATAC
CATGTTTAAGAATGGTAGTATGATGAATTGACCTTATCCAAGAAACCCTTAAGCTAAGGTTTGAGAAGTCTTTTCTTTAT
GGAAATTTGAGGTAATGAATCCAGTTTCAAGGTTACTTTAGTTGGGCGTCGATGATTCTCGAATCCTTTGCTTTCTTTAA
GGATTTCGGTTTCAAGATTTGTGATACCAGTTTTTCCACAAAAGACTCGACTACGGCTAATGGATCGCGAGATATTTTTC
TCTGCCTACTTGCAACCACCTGTTTTTTGCGACCACCTGTTTTAGGTACAAGTGTTTTGACACTTTAGCCAAAAGTTTGG
AACTTCAAAACCACACGAAATCTTATACGTTTCGTGAGACAATGTATCTCAAGGTGGATGACATTCTGTCATCGTTAAGT
TTATGCCATATTAAGTGGTCTACTCCCTCGGTAGAACCCACTATCCTTAGGATCTCTACTCTCTAGATCCGTTTTTTATT
CTCTAGTAGTAATTTTTTGATGTTTCAATATGTATAGGTGTTTCGACTATTTATAGAAAAAGCAACCTTTGGAAACATCT
ATGAAAGTTCATTGGTCTATGTTTGGTTCTTCTTACCGGAAAATCTCATCCATATAGCTTATCAAAATGGAGTATTGTTG
AGAAAAAACACTAACTTTGTAAGAAATGTTTACTATGCCTAAACGGTCTATTTCTCCACGAGAAGTATCATATCATGCCA
GATAGAGCTCAAACTTTAACCTCAGTGTATATATCCATGAAATGATAGTTATATTCCTATTTCCCCTTGAAACGAAAGTT
CCATAGCTAAATGTCCCCAAATCTGGATTTAGTCGGTTTGATGCATAAACCCGAGACCAAACCATCTATTGATAGTAACT
AAACCAAAAAAAAACTGATTGCTTATTGAACCCGACCCAATATGCGTTTAAACCCTAAAATTCAAAATCCCCAAAGAGAA
CAAGACAAAACATGTTAATTCCACCCATATATTTACGTGAAAATCATAAATAAACTCATGGACATACACACGCACTCAAT
TCATCCGATGGGTAGTGTTAGATATCTCTGTTTCAATCATTGTGAAATTCTCTGTTTCCAAGCTTTGTTTTTTGCTTCAA
TGGTGGTGATGATGCTTATGTGACAGTAAGCTCGACTTTTTTTTAAGACGTTTGTCTCTTCTTTATAAAACTGTGTATTG
TTTTATGCAAGTAACAATTCAGATATCAATCGAAAGAGCTTGAAAGAAGAAATAGCTCTAGCAAATTATTGATATAAAAA
CCAAGTTTCACAGAATTGAGAAAAGAGAGATAAAACTCTTAACGTGTTCATGAATGAATGAGAAGCTAACAACAATTGCC
ATTATAGTAAAAGGAAAGCATTTAGAAAAAAGGAAAACACAAGATTTTTTGTCACGTGAGAGTTTTGCCACATCACCACT
CATTTTTCCTGCAACAAGTCGTCACTTCTCTTCTTTCCTGTAACAATTTAGTGGGTATTAATGTGTTTTTTGGATATTGA
AAATCGTCTTCTTCTTTCTCACACCATGGCTGAAAAGGAACCCCACCACTCATACTTCAATTTGTTCGATAAAAACAATT
CGCAACCCAACATTTCCAAACTCAATCTAACCATTACAGAACATCAACGACATATTATCCACCAAATCTCTTTTCTCTCT
AGGGTTCGTCGATTTTGGGGGGTTTTAATATTTTCAATTTGGGAATTTTTTATGGGGTTATAGAACTGAAATCGGGTTAA
AAACGGCTGAATTACGGTTAAGTCTGGTTATAATTAGGTTTAGTTGGTTTATCAATCGGTAAGATATAGAGTAAACCGAC
TAAACCCAGTTCCGTGGGGTTATGGATCTTGAACTATTTATTCGGGGACATATAGCTATGAAACTTTCCTTTCAGGGGGA
AATAAGAGTATAACTATCAATTCATAGATATATAGACTGAGGTCAAAGTTTGTGTTCTATCTGGCATGATGTGATACTTC
TCGTGGGGAAATAGACCGTTTTTCCCATTTTGTACTTATA