| Basic information from miRBase |
| hairpin accession number: MI0002202 |
| Located between position 2253371 and 2253468 on chromosome scaffold_8 strand - |
| mature miRNAs for MI0002202: |
| ptc-miR160b (MIMAT0001908): TGCCTGGCTCCCTGTATGCCA |
| References |
| [1]Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" |
| [2]Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants" |
| [3]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TTGCTCGACATTATCTTATATCGTGCGTTTAGCACTGCATCTACTAATTAATACCGTTGTAGTTATTTGTTTTTTTAAAA
AAAAAACGTTTTCAGTTCAATTAAAAACCAAAACATATAAAAAACTTTAATCTAAAACGCCTTCAGAGAGTAATTCTTGA
TGCAATAACGATATACACCAACATATGTCATGTAAGAGTATCTTGTGTTTGGAATGTGGCCACTTTATTAGATCTTTGAA
AGTCATGGTTCGTATAAAGCAAGATCAAATGTTTCTTCAGCTAAGATTTTGGCAGATCTTACTTTTAGTCACCTCCCAGA
TCTCACAAACATGTTGATTTTCTTATTTATTTATTACAGAATTGATTTCCTTAATTATATGGACTGACTCTATATATCTC
AGTAATTTATAGGGCATGCAAGCTGGTTCAACCTGCCGGACTATGCCCCCTATCGTGTGTCCTCTGTATTCTTTTGCAGG
ACAGACAAATCGTTTGATCTAATAATTAAAAGAAAAGAATAAACGAATTTTTTACAGTGGAAGTAAAACAAAAAAGGTAT
TGTGGGAATTTGAAGGTGGAGTTCCATATTTTATAGCTCAAGAAAAAATGAAGAAATAAATCAGATGAATAATTGATGTA
GGCGGAAGCACTGTAATAAGGGTAGAAACAAGGATAGAAAAAACAGAGCTTGGTCGAAAGTAGAGTTAGAATATAAGCAT
TTTAATTTATAGCTAATTTATCACTGAAAAGTATTTTTAAGAGATTTATAACTCTTTAAATTAATAGATTAAAAATCAAT
CTCTACTAGGGAGTAGCTAGAATCAGAATCTCTAAACAAAACTGAAAATAATAGAAAACCCAAAATTAAACTAGAAATAC
AAAAAAAATCAAGAAAAATTAACAAAATTAGCTCAAGTAAGTTTTATTATCTAATTTAAGGGTTATCTGGATGGAGCCAA
TGAAGCCGGTCTGTCCTTTTATAAAACTGGATCTCGAGAACTTTCAAAAAAAAAAGCATAATCCAACTGGTTTGAAAGTT
ATGTTCTTTTATTATCACTGTGTTCATCTTATGCGACCATATTCTCTCCTAGAACTAGCTAGCCCTGTTCTGTTGTTCTG
CCAAGGTATCCCTAAGGTATCCGCATAATTTTTTATGACAAATCTTTATCAAACTGTGAAAGATTTTCATGTGACTGCTA
AAAAACCTTCAACTTATGCTAGCCCGGCTACATCAATAATTAAGGCACGTGGAGAGGAAACGGTGATTAATAAGAATAAA
AAAAAATCTATTTGACTGATTAGAATCATTTCATCTTCACAATCTTAATTTGCCGGTCATTTACCATAAACAAACAATTT
AGTCAGTTAACATTTTTATTCACAGTATCCAGAAATCAATCAACAATTATTCATGCAGACCACGAAAGGCTGAGAATGGA
CATACAAGCAAACCTGACACCTGTTGTTTTTATGTCAACCCTAAAAATGTATAAGTGGCCTTATACTGACAGAAAAAGAT
TCTCACAAAGATATTGACTATTCGAGGAACAATCACAGACGTTACTTGCATCATTTGAAAATATTATGGGCTTAGGCGCG
CGGTGAAGAACAAATGGGTCTAGCAATTGACCGTATAGAGTTAATAATCACTCATGCCATAATGGACTGTAACCTAAGGA
AAGAACAGATTTCCATCAGAATTAAGAGAGAACTTGGACATGGACAGGTCCTTCATAGTATTCTTCAAAAGAAAACACGA
GTCTTGCTGATAAAAACCAGGTAAGGTAAGTAGCGAAATGACCGTTTAACATGCATATACTTGATTAAATGATCTAATAG
AGAACATAATTAATATCTAATTTGTATATGAAGACAAACATGTACATATATACTCGCACTAAGACATGCCCGTTAGAGGG
AATTTAAGTGGGATCGATGGTGGATATGATCCAGACAGATAAAGGGTTTAGCACAGAGAATCTCAGTTGCTTAATTAACA
AAGTAGTAATATTACCAAATAGTGGGAGTGGTAATTAAAATGATGGTATAAAAGGAAATGGAAAAGATAAAAAGAAGGAA
GTGATGGAGATAAAGAAAAGGATATGAAAGATCGATAGACAGGTACGTAGATAGGGTAAATTATGTGGTATTTCTTTCTT
CTTTTTTGAGCACTTTATTTAAATAAAGGTAAAGAAAGTAGAGAGATTGAGAGAATCCATGCGTTTCCAAGCACTCCCAG
ACAAAATGAGCTTCTGAGAAGAAAAGCAACCTTTGCTTTACGACTCAGAAAAAGGAGATTTCAAACCACCATAAGGGTTA
GCTTAGGAAACTGCGTGGTTAGTAACCCAACCACACCATTTCCACTTCTCGTTTTTCTTTCTGTCTGAATATCTCTCTCT
CATATGATGGTGCCTGTCTATATTTATTTGCGAGCTGGGGGTGCAACTACAACCCCACCTCTCTCCTTCTTTCCCTCTCA
ATTCAACCACACATAAACCCTTCCGAATAATAACCTTCTACACACCGGCCCTTTCTTTCTCAAGTCTAGCTAGTTTGCAG
TTGGTTTCCCTGAGTTACGCCAATTCAAAAGGGCTAAATTTTTGTGGGGCTTTGAAACCCTTATTTGATTATGACCCAGT
TTCTATTTCCCATCAATCTCTCTGTCCTCTCCTCCTTAAATACCACTCTCCCTCCCTCTATCGACCTCCTTCTCCCTCCC
TCCCTCTACCCTAATTTTGATGCTTCACTAAATACATTTTCTCGTCAACTTCTTTAGGTATGGTGTTCACGGGGAAGACA
ACCTATGGTAGAGAATAGATCATCTTCTATATGCATGCACTTGTAGTTCATGCATTTATTCATTCTAAGTAGTGTGCATC
CTATGCAATTATGGGTAAGCTCTTATACACACGCATCCATGCTTAGAAATGCGCTATAGTCTATAAGTATAAACCATAAT
GCACACATATATACATGTTTTCACCACCATGCATCCATAT