| Basic information from miRBase |
| hairpin accession number: MI0001018 |
| Located between position 4691022 and 4691137 on chromosome 5 strand + |
| mature miRNAs for MI0001018: |
| ath-miR398b (MIMAT0000949): TGTGTTCTCAGGTCACCCCTG |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis" |
| [3]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [4]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [5]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
>promoter (3kb upstream pre-miRNA, by PMRD):
GAGGAGGTTGATAAGGAGGCTGGATTGTTGGAGGTGGCTGGGACTGACCAGACGGAGGGAAATAAGGCTCTTGTTGGGGA
GAGAACTGGTTAGGAAGCTGAGGCAGTTGTAATGAAGGTGGTGAGAGACCGTGCTGTGAGGCAGGCGGTTGGATAAATTG
TTGTGGTGGGAGGCCCTGCTGAGTAAGAGACGGGGGAGCTGCAGCAGAAGCTGGTGGCTGAGGCAGAGATGCAGGCGGCT
GAGCAGTGGGTTCAACATGTGTAGAGTGTGTCTCCGGCTGCTGGTTTACCTTTGATAACTGGAGCTTTGAAAGTTGAAGC
TGCGCCTCAACTATTTCTTGTTTGTCCTTCAACAACTGTACACCGTTTTGCACCTGAATGCAATCATACAAAGAAGGAAC
TGAGGAATCTAGGATCTTGATAGATGATATAGCGAAAAGTATGAAAGCTCAGATGCATTGAAACATGAAAAATATGAAAC
CAGAAACTTGTTTGACGTTAACAGATCAAGAATTCCCAGGCCAGTCAAGAAATGGCATCCAAAACCAAAAGGCAGAGAAG
AACGTTTGTCTAGTATCTCAGATTCATGTGATTATTTCTAATTTCAAATTAATCTCCATTAGGTATCCCAAAAGAGTAGA
GTACCTCTAACATGATGTTTTCAAGCTGTCTCAATTTACCATCAGTTTTTCCATGACTGTTCCCAACAGAAACTTTCACA
TCATCAACCAAATTCTCGAGATCTCGGGTTCTGGTCTCCAGCTGCGTTAGACGTGCACTGACACCTTCCATAACATGTAA
CAATTTATCAGCATGGGCCTTCATTGTCCGATCGATCGCAGATATAATCGCTGACTCGGGGGAATTTCGATCCTTCTCAG
CAAACAACTTTGAAGGTTCGAGAGAGTCCATAGAGCCATAACTCTGAAAGAACGAACAAATGCAACAAGTAAGGCTAAGT
GTGATAATTGTCATAATCCTAACCATGCAAGCATCAAGCAAGGTTTAAGCAAACATTATAATGTAGAAAACAGATAAGCA
AATGATCGTTGTTACACAAAGTCTCTGCTTTCAACTTCACACGATGATAAATGTAAGCACAGTGAAGAATAACACAGAGC
CGAGCTTGGGAACAAGAACCAGAACTAGTACATATCTTCTAAACCTAAAGAAACCTTAAGAACCGATTCTAATAAGCCAA
ATAACGTAAAATCGTGATTAACTAGTGAAGCCAACAAACGAAGCTAGATTGATCGCAAATCACAAAGACCGGGAGATATA
GGAGAACTTAGAAATATTACTCTTGCGGAAGAAGCTGAAACCGGTTTAGGATCAGACGCATCCCAAACCCTAGCAGCCGT
GGAATTAACAGATCCGGCGAGATCTAAAGCGTGGTGAGACAATCCGGCGGAGGCATTAGGGCGCATAGGTTGGAAATCAT
AGCTAGGGAAGATAGCTTCCTTCTTCGATTCCAATCCATTATCGCCGACACGGTAGTTCTGATGATCGCCGTCTTGTGAA
TTGTTGCTGTTGTCGTTCATGAGATCCATTATCTGCTTATCCGAGAACAGGGCCGATTTTATTAGATCGAAAGATTGCAT
TATATAATTTTTTTAGTCTCCCTTGATTTCGATTTTATATGATTTTCTAACTTCCTGATGAAATAATGTCATCATTTTTC
ATCGGTCTTGTTGCTTTTTCTAAGTCAGCATTTCAACTAATTGCTGAAGCCAGTTGGGCCTACTAACTTAAATTGGCCCA
TAACTATTTACTTTCTGCAACGATGAAATCTCAAACACAACTCGATGGAGGGACAAAAGAAGAACCAGCAGGATTTTACT
GCAGTTACGACTTTGAGAACAACTTAAAACATGACTAACTCAAAAGTCTTTACACTGTGATTGGTGGGATACGCCAATCC
CTTGCAATAGTGTGAGCACAAATAGCAAGCTATTTTGATGGCTCACTCCCTCAATAAATTGAGTTAATATCGTGTGAACC
GATGGTCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGC
TTAGGTAAGTAAATCGTGATCCTTTTTATAGCAAAACTTTGCCTTTGGTTTGCAAATACACTTCCGATGTGGGACTTGTT
TAAGCTGAACACTTGATGGAAAGTTACTCGTAAGTCATTTATTGAGGAATACGTTTAAAGATTAAAGATTGAATGTTGAG
GAAAATTAATTTATTGAGAAAATTTTCAAGTTATTGATTGATAGAGTTAATCTCAGTAAGAGACAACCCTCCAAAAATAG
GCGTATGCCGCTTGGTACGACAAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTATGTGCTTATTGCAC
GGCTCCGTGAATTTTCTTCGAGAGCTCTCTCCGTTTTATATATGCCTTGAGTTTGTTATTCTTCTCTCTGTGTTTACGAT
GTGGGACTAAAACCAATATATGCAAAATTTACGCGCTCTCTTTTGTCACAAAGAATATGGGCTTTTATTACTTTTCCCCA
CTCTCCATGCAAGTTATTAAACAAAATTGCTAATATGGGCTTTTGTAACTTTGCCCCACTTTTCGTAATTGTGAGGCCAC
TTTGATCTAAATTTAGAATATGGGGACTAGGGACCATAGAGAAATTTTAATACTACCATAGAAAGTTCGGAAATTCTGCT
AGTACAAAACTCGCCGTTGTACTTTCAGAAAAGTACAATGATGATGATTTTCTTCTTTTAATCAAGTTTGCAGTACACAT
GTCCGAAGTTTTTTCTTGTACTATCCCAAACATAATGAATGCCACATAACTTGCTCGTGTACTACACAATTGTTGTGGTG
TTATTGTGTACTACCCAATCCATTCATTGTCTGTGTATTTATAGTTTCCAGCATGTTTGAGACAAACCAAAACTCAAAAT
GTAATAACAAGAAGATATCAATATATCATGAAGGTAGTGG