| Basic information from miRBase |
| hairpin accession number: MI0001013 |
| Located between position 4142323 and 4142473 on chromosome 2 strand - |
| mature miRNAs for MI0001013: |
| ath-miR396a (MIMAT0000944): TTCCACAGCTTTCTTGAACTG |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [3]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [4]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
>promoter (3kb upstream pre-miRNA, by PMRD):
ATGGAGATTAATATCATGGAATTCAACCATACTAAGCCGAGTATGAGCGATGTTAAGCAAGGAGAGAGACCATCCGGTTA
GTCACCACAACCAAGGTGACATTGTTCTTAACCTATCTTTCTCACAGATTCATCCCTATGCTCATTCTCACACTGGGGAC
GGTGTGAAGTAAGTATGGGGGGTTAATGAATCTGTTACTACTAATGCTACTCATTATTTTGTTGACTTGAGACCTTTATC
CACTTTTTACACTGATACGCTCTAACAAAGCAAAAAGCTTTTATTTTCAGTTTTTATTTCTTTTCAAGGTACCATTGGGC
AAGGACAATGTAGGGAACAATGAACCTACTATATGATTAATAAGACCATTACAATGTGCTAACTCATACCCTAAGTGACA
AGTTTTGCAGGACTCACAAGGACGGACAATACCTAGAAACCCACTACCGTATCTATCCCCTGAATTCTCACTACAGAGAC
TTTGTTTGACCTAACGTTAACTCTATTTTATTTGGACGAATTAACCTGATCTTAATTCTTTCTCATGAAGGGGTGTTAGA
GCGGGGAAACGAGCATATACATTCAGGACTTCTTATCCCTTTTTACTACTCTCTGCTGATCTTGAATGGCCACTCATTTT
TAGTGGTTCCTACCCTTAAACCCTATCCTTTTTTCAAGCCTCATGCATTCTCTTTTCCTTTTTCATTTAGCAGATATGTG
CAAAAACGTTGGAGAAAATGGAACAACACAGTTTCCCGCCATAAAGACAAAAATGAAGCAAAAATAAGAGATTGCAACAA
ACGGCCTAAGAGTTTATTCTTCCTTGGAACCAATTCAAAAAGTAAGCTCATTAGACTCGGTGTTTCAAAGTTTTGTTTCC
CCTTCCATAAAAATAAAAAAAAATTAAAAAAAAAAAGAAAAGAAAAGGAAGGAAAGGAAACATTACAACCAAGAGAGTCT
AGTGGCATAGTTCGAAGGAAAGACATGGAAACTTAAAGGAGAGATGAGCCAATTGCAGTAGAGGGCCCCCTCAGAAAAAC
CTAAGTCTAGGGGAACCGAAAGTAAGAAAGAAGTAAAGGAGAAAGAGGTGTTTAATAGAAGACGTGGTTGGAAACTGTGG
ACCTCAACCAATTTGATAGCTCTTGCGGTTTTGCAACATATCCTGCATTCGAGACTATACGGTAACTCTAAACACTTTAA
CTCCCCCACTTAAACACCAATTCATACCAAGTTCCGTCTACCCCGAATGACACCCTCTAGTGAGAAATCTCACGCTACTT
TTAATAAATGAAGAGGGTTAACTGATGAGATTCTTGAGTTCTCTTGTAGGTCCGAGACGGATGGATAAGGATAGTGAATG
TTTTGATTATATAGTGAGAATGTTCTAACGTGAAGTTTTTGTCTTTACGCGTCCACATGATATCTTTTAGGACATGGTCT
CTGATAGTAAGAGACTTCTGCTTTTTTCAAAATCTCTCCACCAGCTTGGCTTTGTTGTTTGCTTGAGGACAACAAAGTCT
AAGTCTGGGGGAGTTGATAACATCGTATTTTCGCCCACTTTTACTATATTTTTATTAGATTTTCCATGGAGAAATCAAGA
GTTAAAGGGCAATTAAAGGCATATTTCAAGTATTTGAGCTTCAAGGAAGAATTATTAATTTTTCATGCAAAAAGGAGTAG
AAGTCAACAAAAATCCGTTTCAGTTTAGTTTATGTGCCTCAGATGTTTCACATCCGGCCAAGGTCTTCCCGATTGGCATG
AGGGTATCTCGGTTTCATTGGAAAGCTAGAAGAGTCAAGATTAACGTCAAAGTTGAATCGAAGCAATCCACGAAGCCAGT
CATAAGTTATGGCCTGAACAGTGAAGGCATGTCCTAGAATCACGGTTTTAAAAATGATCAATTTAAAACCGCCTGCCAAG
GTGACTTGAACCCAGGCGTCTCCTCGAGTCTTTCACCGACCACTAGGGCGCACAACCACGTTCCCTTCCTCTTGCCACCG
ACTTCCAGCAACCCTAAGAAGCCCAAGAACTTGGCCCATCACTTACTAATCAATGGAAAGACGTTTCTACCCTTTGACCT
AATGAAGCCCTGTAATACAAGTTTAGGGGAAACCCTAGAAAACAACCACGAAAAAGGCTGCCTCTTGCGGCTCTCACCGC
CCCAAAAGTCGTCCTCCTCTTGTTCTTCTTTAGATCTCTCTTTTCTCTTCAATTCTGTATTCTCTACTTGTAACAGGAAG
AAGATTTATAAAGCTTTGGAATTCCAGAGAAGATCTCTAAACCCTTGTCTCTACTCATACTCTCTTTTATGAAATTTCTT
ATTCATATGATGTTGTGTTCTTTGAGTATGTGTGAGTAGATCTCTAGTTAGGTTTTAGGGGGGTTTCAAAGGGTATTCAT
GGGGACTTTAGATTTGATTTAGGTTGGCGGTTTCTATGGTTTTGTTTGATCTTAATGCTTGTATATCCGGAACGCCACCT
ATTACTTGACCTTAGGTATTTCATTCTTTGGCAAAATCTCGTTTGAATGCTTGAACTAGCTCAACTGAATGAAGAACTAT
AACCGTTGCACACCCGCCGAGTGATAGGGACTTATGGACTAGAATCGAATTTGAACTTAATGCTTTGATCTTGTATTTTG
AAATCATGTTAGCACCTACTAACCGATAGGGCAACTGAGTATGCAAGATATTAGTGATAATAGCCGGCTTTCACCTATTA
ACCGTTTGGGTTTAGCTGGTCTTGATAGAGTTTTGTATGTCCGAAAATTTGGAAGTAAACAAACCTAACCATGTTATCAC
CTGAATTAGAAATCTATACCTTACTAATTGAACCATGACGCCTGGAGAAAACCCTAGATGATCTAGCGTTTCGTTTTACT
TATTTTATACCGCTCTCTTTATTGCTTTCTACTTTTATTGCCTTTTCATTAGTTTCGTTTTATTGCTTTTTACTTTTATT
GCATTCTTTACTTATTTTCACTGCATACAACAACCTCCAC