| Basic information from miRBase |
| hairpin accession number: MI0001014 |
| Located between position 13611798 and 13611932 on chromosome 5 strand + |
| mature miRNAs for MI0001014: |
| ath-miR396b (MIMAT0000945): TTCCACAGCTTTCTTGAACTT |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets" |
| [3]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [4]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TTTTTTTTATATGCCTTCTCGTCATTCTACGGTATCTCTTTCTATTTGCTTCCACGTTTTCTTCTTTTTTTGCTTTCTCT
CTCTTTTCTTCTTCCTTTCACTTCCTTTCTCATTGAGGTTTTTCTTGTTTTTCCTTTACTCTTCTTATTTCTTCTCTAGT
TCTTTTCCCAAATCTAGTTCTCTTCCCAGATCTCTTCCTCTCCACCTCTTTCTATCACTTCATCAATGGAAGTACAACGA
ACAACGGCAACGTTGATTCCTTGACATAGTGATCAAAACAGTGGCGATGAAACCGGATAACAAACTCACAAACTTAGGTG
AAAACGTACGTCGACGGAGATGATCTCAATGACGATGACTTGGGTGCATGATGGATATGTGATAACACTAGATTTTAACC
ATTTTAAGCCCTTGTTTTTCATGCATTTAGCTTAGTTTCATGCTTCTTTTCATGCATTCATAGTCCATTTTCTTTCCTTT
TCACATTTTGCATTGCATTGCATAGCATATTTGCATTTGGAGTGTTTTACAGGTGAATCAGGTATTTTTGGACTCGATTT
GGACATTTTCGTCACAAGGAGTGGACTTGCTCGAGTTTGTGCAACAAGGAAGGACATGGAGCCATGCTCGACGTATATGC
TCGGCTGGAGATCAAGTGACACACATGGAAGAAGAAGAGAAGCTGCTCGGCTTGAAGTCGAGTGATATGACCAAAGAACC
TGCTCGAGATTTCTGCTCGACCAAGACCCGAGTGGTACTGCGCCGACTTACTTATTTTGTATTTTTCCTAATTAGGGAAT
CCTAGAATTACCTATAAATAGACTCTTTCTGTTTTTGCCCAAAATATCTTAGCTTTGTCTGTTGGATATTAGGCTTTTCT
AGATTTCTATTGCATTTTCCTTCTATTGTGTTAAGAATCTAAGTTTGATTTCTTCTACAAAGTTGTTTATCTTGTTGAGT
TCTATCACTTGCTAAGTTTATAATGATTTCTGGGTTTTATGATTTTTCTGGGTTTTGTTCTATGATGTTCTTTATTGTTC
GTGAGTAGTGTTCTTCAAAGTTCTTGAATATGGGTTAGGTTTAGGTAGATACCTCTGTTCTTTTAGCTAGCTAAGTTTAT
AATTGCATGATTTCCTTCTGTGTTAGGAGTTCTTAATGCTATTTCCTTTCTGATCAATTGGAAATTGATTTCAGACTTTC
TCAACCTAATAAGTGTTTGATGAAATGTCTGAACCAACTAATTTCAGAGATTTGTAGATTCTAGCCCAAGACATTGGATG
TTTAGAAAACTTATTTTTCATCAATGAAAGTTGAGATTAGGAAGTGGTAAAGTTATGAGGATCATTGTCATGAGAGTGGA
TTGATCTTGTTTTGAATCTATTGTCTAGGGATAGCTTGATTGAGTTTGTTAGTTAGCTAAATAGATTGAGGAGTCCACTA
GAACCAATTACCCCATTCTTAAGAGCTCTGTTTCGTTTTATTGTGCATGACTCGTGTCTTTAGTCTTCTGCTCGTTCTGT
TTAGTTTCTTGTGCAAACTTGGTGTTTTTAGTATCTTGCTTGACCGGTTTAATATTATGCTCGGCCGAGTACTTTACTTG
GTGCTTGGTTTACTTTCTAGTCCATGCATTTGATAGTTCTTGGTCTTTAATTTCATTCGTGCTTCTATCACTTGTGTTCT
TTACTTTCTACTTAGTATAGTTTCATTTCTAAATCTGATTTGCATGTTAATCTATTGCTTAGGTTTAGTAGAACACTAAA
CCCACTCATACTTGGCTTGACTTAGTACTCTATGATCACATCCTGATTGATAGCAATACCACCCAATTGGATTAACACCT
TAAATGTTGCAATGACATAAGATGCATTTAGGGAATTGACACACAAAATTATTGTATCAATATGACACGTTGACGCATGA
TTCACTTCTCTCTCGAAGTTATCATGGCTATGGGTTTCCATCACGTATGCAACACATACAACCTAAAACGTAACAATGAC
TTAATATTTTACATCATCAGTCATCACTACCACCATCATCGCCAGCATAATCACACCTTCGACGGCAAACACAAATCTGT
GTCACTTCTATTATAGAGGAAAAACCCAACATTTTCCAATGACGGTGATTTTGTTTGTAACCGCGCATTCTAACCGGGCT
AAATTTATTTTTTTCAAGAAAAGAATAATTAGTTTTGTTACCTATTTTGACGATGATTTTTCTTTCAAGTTTATGGTAGA
TATCATTTTTTTTAATTTTTTTTTGTTAAGTTACTTTGAAAATATATGTTAAATATAGATGTGGACCAATAAATCATGTT
TTTAAAATTCTATGTGGACGATTTTTTGAGCTTATAATCTCAACTTTTATATAATGTAGACTAGGTTTTGACCCCATGCT
ACGCGTGAATACTTTTTGATATATTTTGGTGATTGATTATAGTTTTTAAATTAAAGTAAGAATTTCATTTCAAATACACT
ATGAAAAATTATAAAAGTCATTAGTATTTAAAAATCAAATTTAATCAAAAGAATCATAAATCAATTTTGTTTTCTCATAT
TCAATTGGATGTTAACACCTATGTCTTCTTATATCTCTTCACATTTATTGTTTCTTAATTTTCATATTTCTTTTTGTCAT
ATTAATTATCAATTTTTTGGGGGGATTTGCAAAAATACTCTTTTCTACTACCTTTTTGCAACAATAATTTTTTTGTTGTC
CAACACCTCTTAAGATATTTATAAAGTCTTTAAATATATATGTAAATACTTTAAACCCCCTTTAAAAACCTTTGTAAATC
ATTTTAAAACTTTTTACAATGGGTTTAAAAGATTTACAAGAGTTTTTAAAGAGTTTTGAAAGGACTTTCAAGGATTTTAA
AAATATTTGTAAATCCTTTTAAAATATTTTTAAAACTCTTATAAAGTCTTTAAATCATTTTTTAACTCTTAAAAATTATT
TGTAAATATTTTAAAACTCTTGTGAACCTTTTAAAATCTT