| Basic information from miRBase |
| hairpin accession number: MI0000217 |
| Located between position 8236153 and 8236254 on chromosome 3 strand + |
| mature miRNAs for MI0000217: |
| ath-miR173 (MIMAT0000206): TTCGCTTGCAGAGAGAAATCAC |
| You can find this miRNA in ASRP: miR173 (accession: ASRP886) |
| References |
| [1]Park W, Li J, Song R, Messing J, Chen X, Curr Biol. 12:1484-1495(2002)., "CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana" |
| [2]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [3]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [4]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [5]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TGTGTTGTCTCTAAAAACCATTCTTCTCCGCATGAAGAACCGAATGAAGACCATCAACACTATTGGGAGGAAGGACATTC
CGAAAACTATGATTAAAAAGATCAATTGCATCCAAGTAATTGAAGTTGCCATTGCAATCAACTCTAGAGACAGCGCGAAC
TGCTCCGTCGGCCAAATTATACACTCGGAAAGGAAGCTTTCTAAGTTCGAGGTAACAATCCATTAGATACTTTTTCGATT
ATTTTAGTAATTTTTTTATTTATTCTCGGCTTTCTTCTAAGTCCGAGGTAGCACTCCGTTACTTTTGCTTTAATACTGAT
TATCAAAACTTTCATATTCTAGCAAAATTTTAGTAGCAAGATCAGATTTTGTACAATTATTTTTTCAAATCAAAGACACA
AACTACTAACATAATCGAGAACAGATGGAAGACTTCTTGGAGTGATGGAATGCCTCTCATCCCACGGGCTCAGTACTTAT
TCACAAGCTCATAAGACCTGCTAAGTCATTAGATTAAGGAGCTAATAGCTTGCAAGGAAAGTCACGTCCATGGTTCAACA
CAATCCGATGAAAACCAAAGTAAAAATTAGTGTTGAGCCATATGAAAAATTAAAAGATACATCAGTTTCTAGTATTCAAA
GAAGTGGCTTACTTTTTCAGAGCTTCCATCTTTTTTTGTCTCTAATAAATCACAATTCGATCGTCATTACAGAGTTAATT
AAGTATTCTCTATTAGATATGTGTTAATATAATTTTCCTTGCAATTTTATAATAATAATATTTGATAATTGAAATGAATA
TTTGATTATATATGAAAACATTACAAGATAAATAAAACAAAACAATTTTACATGAATATATATATATATATATATATATA
TATATATATATATATATATACACATATATTAACTTAGCCAAGAGATACATACATGACATTCCACTTATCATTTAGACAGT
AGATTTTAAATTTGTATTTACAATTTCAAAACTGAAATTCATTTGTAATCAAAGAAAAACAAAACAAGAAAAGGGAGGAG
GAGTGGGATTTGGGTTGCTTAACAGTATTATATATACACGTCGTTAGTTAATCAATAAATTATGAGCAGGTGTAGTAGCT
ATGAACATGGTTTTACCAAATTGGTAAATTCATGTCATTGTTGTAGCACTTTAGCGAGGCCAGCAAAATGGCGTTCTTGG
AAAGGGCATGGCGGCCCGTGGCCGCCAGGGATATGTGTGCAGCTAGAAGGATTAGAAGGAGTAACTTCACCTTTTTGTAG
AAACTGTAAATTGCCAAGACGCTCGTTTGGTAAATACCTTAACGCTTCGTTTGCTGGAATGTGTACCACCATTAGTAGAA
GAAAGTATAATAAGACTATTAATGCAAGAGATTTTTTCATATTCCTTTTCTAAGAGTAGAATGGAATGAATAAATGAATG
AATGAAATAGGGTTTTTCTTGTTTAGATCCTGTCGCACCCGAGAATAATAGAAGCTGAATTAATTGGTGAAGAGTTTTAT
GGTGGCGATGTTGTATTTATAGAGGGAAATGATTTCAAGTTTACAATGGGATTTTTAATTTGTTTTGTTGACTATTATCT
TGCGGAGAGATCTTGACTGTTGACATGTATGTAGTGTTTGTTATTAAAATAAATGCATTTTTGTAGACCCGATTCTTAAA
TATGTTAGGCATGGTCAAATTGTTAGACTGTAAAAGCTTGAGTAGAGACATCGGTCAACTTTGTTTACAAGAATTCTCTA
TAAAATATTATACAAATTGATCGGTAGAAATTAGATGGAACATTTTGAATTAATGTTTGACAATGTATAAATTGGTTTGG
TCAATATCTAGGAATGAAAACAAGAGCTGCTTCAAAGTTGTTCCATTCTTAAGTATACATAGAGGTGGCTTGATGGGAAG
TTTCATGGAAGTGTAGTTTTATATCTACTTCCAAATTCGTTGATCTGTTTCTTATCTCAAGCTAAACATGTTTAGAAAAG
ATGTGTTAAAAACATGTGACAAAAAAAGAGTCAAATGTTTGGCAAACAAGGTACTTAGATTTTTGGCATCTATTCAAATA
TAATAGAATCCCAAAATTATGATATTTGTCAATCAAATTTGAAAAAAAAAAAAAAAAAAAAAAAGATTCTACAAAAGATC
AAACGTATTGCCGTAGATTTATCATAATTTTAATTCTTTCACACTACCACTAGTCCACTACCATATAGTGATGAGATAAT
CCATAATCATAAATAAGATATAACTTTCGAATTCTTGTTTTTGTTGCCTCAAAGTTGTTGGATCATTATTTTTTACGTAA
ATGTGGCTTAATGAGAATTTATGTTTGTGGGAATTGTAGTTTGCTTCCAACTTTTTTTTTTTTTTTTTGAACACGTAGTT
TGCTTCCAACTTAGTTTATCTTTTTCTTATTTCAAGTTAAACATGTAAAAAAACATGTGACGACGAAATTCAATCAGTTC
CTCCAATGTTTGGCAGAAGCCAAATCTTTGGTAAACAAAGTAATTTTTTTGCCATTTGATTGGTTAGTATAGGAGAATTT
AAAAACGACGATAAGGTTTAGGTAAATTATTTCATTTGAAAATAATTGAGCACCGTTAATAATTTTCATCCATAAAATAA
TATTTCAAAGATGATATTTGATCCCCATTAAATTCATTCGTAACCAAAAAAAAGTTATGAAAAAAGAGTGGTCGTGTGAG
TTGCCCAAGCACCATTATAATAAAAAATAAAATAATTAGCAAGTAATAAGGAATAAAATCCTGTAATTATAGCTGAAAAA
GGAAAAATATTTGGAGACCGTCAGATTCGAATCTGAACAAAGCATAAAAAAGTCAACAAAACTTAAAGCGGCGGTCTCAT
CGTAATCTCAGCCCAATACCCTATTTTCCTCTCCCCTATATAAATACTTTCTTCTTCTACTGATCTTCTTCTCACAAATA
AACCCAAATATATCAATCTACTGTGTTGGTGATTAAGTAC