| Basic information from miRBase |
| hairpin accession number: MI0000196 |
| Located between position 24884066 and 24884396 on chromosome 1 strand + |
| mature miRNAs for MI0000196: |
| ath-miR163 (MIMAT0000184): TTGAAGAGGACTTGGAACTTCGAT |
| You can find this miRNA in EMBL: (accession: AJ493638) |
| References |
| [1]Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants" |
| [2]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [3]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [4]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [5]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TTGGGCTTTGTTTTCTTATTTTGTTTTTTAAGGGCTTTAGTGGCCCATGTAAGTTATGTTTCATCAATAAAACTCCACTT
ATAAGAAAGAAAAAAAATGGTTACAACCGAAGTCCAAAAAACCAAAATAGTGACGTAAAAACTGTTGCTTAAACAATCTG
AAGTCTGGACGCTTGATTTGATTCCTTCCGTTTTCTCCAAAACCAGACGAAGGCAATCCCTAAACCGTCACATTTTTGGC
GCCAAATTTCATCTTCCTCATCATGGCCTCTGATTCCGCCGGAGCCACAATCTCCGGCAACTTCTCAAACTCCGACAACT
CAGAAACCCTAAATCTCAACACTACGAAACTCTACTCATCAGCAATTTCCTCTATCTCTCCACAATTCCCCTCACCGAAA
CCAACATCTTCATGTCCTTCAATCCCTAATTCAAAACGAATCCCTAATACTAACTTCATCGTCGATCTCTTCCGCCTCCC
ACACCAATCATCCTCCGTCGCTTTCTTCCTCTCACATTTCCACTCCGATCACTACTCCGGTCTCTCCTCTTCCTGGTCCA
AAGGAATAATCTACTGCTCACACAAAACCGCTCGTCTCGTTGCAGAAATCCTTCAAGTTCCTTCACAATTCGTTTTCGCT
TTACCTATGAACCAAATGGTTAAGATCGATGGCTCTGAAGTTGTGTTGATTGAAGCTAATCATTGTCCAGGAGCGGTACA
GTTTTTGTTTAAAGTCAAATTAGAGAGCAGTGGATTTGAAAAGTATGTTCATACTGGAGATTTTAGATTCTGTGATGAGA
TGAGATTTGATCCGTTTCTTAATGGTTTTGTTGGTTGTGATGGTGTTTTTCTCGATACTACTTATTGTAATCCTAAGTTT
GTTTTTCCGAGTCAAGAAGAGTCTGTTGGTTATGTTGTTAGTGTGATAGATAAGATTAGTGAGGAGAAGGTTTTGTTTCT
TGTAGCTACTTATGTTGTTGGTAAAGAGAAGATTTTGGTTGAGATTGCTAGGAGATGTAAGAGGAAAATCGTTGTCGATG
CGAGAAAGATGTCGATGTTGTCGGTTTTGGGGTGTGGTGAGGAGGGAATGTTTACTGAAGATGAGAATGAGAGTGATGTT
CATGTTGTGGGGTGGAATGTGTTGGGTGAGACTTGGCCGTATTTTAGGCCGAATTTTGTGAAGATGAATGAGATTATGGT
TGAGAAAGGGTATGATAAGGTTGTAGGTTTTGTGCCTACAGGGTGGACTTATGAAGTGAAGCGGAATAAGTTTGCGGTTA
GGTTTAAAGATTCGATGGAGATTCATCTTGTACCGTATAGTGAGCATTCGAATTATGATGAACTTAGAGAGTTTATAAAG
TTCCTGAAACCTAAAAGAGTTATTCCTACTGTTGGAGTTGATATTGAGAAGTTTGATTGCAAGGAGGTTAATAAGATGCA
GAAGCATTTCTCTGGATTGGTTGATGAGATGGCAAACAAGAAAGATTTTTTATTGGGTTTCTATCGTCAGTCTTACCAGA
AGAATGAGAAAAGTGATGTAGATGTTGTGTCACACAGTGCTGAGGTTTACGAAGAGGAAGAGAAAAATGCATGTGAAGAC
GGTGGAGAGAATGTTCCATCATCTAGAGGACCCATATTGCATGATACAACTCCAAGTAGTGATTCAAGATTGCTGATAAA
ACTACGTGATTCTTTGCCTGCTTGGGTCACTGAAGAGCAGATGTTAGATCTGATTAAGAAGCATGCTGGTAATCCCGTGG
ATATAGTAAGTAACTTTTATGAATATGAAGCAGAGCTTTACAAGCAAGCCTCTCTTCCCACGCCTTCCTTGAATAATCAG
GCTGTTTTGTTTGATGACGATGTAACCGACCTCCAACCTAATCCTGTGAAAGGCATTTGTCCAGATGTTCAAGCAATTCA
AAAAGGTTTTGACTTACCAAGAAAAATGAATTTAACAAAGGGTACTATTTCTCCTGGGAAGAGAGGCAAAAGCTCGGGCA
GTAAGTCAAACAAGAAGGCCAAGAAAGATCCAAAATCAAAACCAGTTGGTCCAGGGCAGCCAACACTTTTTAAGTTTTTC
AATAAGGTCTTAGATGGTGGATCTAATTCTGTTAGTGTTGGTTCAGAGACTGAAGAATGCAATACAGATAAAAAGATGGT
CCACATTGATGCTTCAGAAGCATACAAAGAAGTGACAGATCAATTTATTGATATTGTTAACGGTTCTGAATCTTTAAGAG
ATTATGCTGCTTCCATCATTGATGAGGCTAAAGGAGATATAAGTAGGGCACTGAACATCTATTATAGCAAACCCCGTGAA
ATACCTGGTGACCATGCAGGTGAGAGAGGACTCTCTAGCAAAACAATTCAGTATCCGAAATGTTCAGAAGCATGCTCCTC
TCAGGAGGACAAAAAGGCTTCAGAAAATTCAGGACATGCAGTCAACATATGCGTGCAGACATCAGCAGAGGAAAGTGTAG
ACAAGAATTATGTATCTCTACCTCCTGAAAAATATCAACCTAAAGAGCACGGTTGGTGTATTTATATGCACAATCTTATA
AATTTTATACCATAATCAGTTAAACTTTCCTTAAATTAGAGAGAATTTGTTTGCAGCAAATTATTTGCGGTGTAGTAGGA
ATATTTAGTCAACCAGCTGCAATATTTCTGTGCATCTACACCAATATGTGTTTTGGTAAAATGCAGCTTGTTGGAGGGAG
GGACAGCCTGCTCCATATATCCACCTTGTCCGAACATTTGCTTCTGTTGAAAGTGAAAAGGGAAAGATCAAAGCTATGTC
TATGCTTTGCAACATGTTTAGAAGGTTGCCTACTCTCTTTCTTTCTCGTTCACTCTATTGAATAAGATGCAGCAATGATA
ATTGGTACTTAAATTTGTGTAAATTCATCCATCAGCTTGTTTGCTCTCTCTCCAGAAGATGTTCTGCCCGCTGTTTATCT
TTGCACAAATAAGATTGCCGCTGACCATGAGAATATTGTC