| Basic information from miRBase |
| hairpin accession number: MI0000989 |
| Located between position 3961348 and 3961464 on chromosome 1 strand - |
| mature miRNAs for MI0000989: |
| ath-miR171b (MIMAT0000920): TTGAGCCGTGCCAATATCACG |
| You can find this miRNA in ASRP: miR171 (accession: ASRP444) |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis" |
| [3]Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets" |
| [4]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [5]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [6]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TTGTGTTGTTGTTATTCGGATTTAAATTTGGCAAAATACATATTGTTGAGGAACAAAATATGGGGCGAGTGTTATAAGCC
GATATTTTAAGCGTTAGACTTAGATCATTAACATATCTATGTGATTTATTTTTGTGTTTGTTGTAAAACAAAGTACTCGT
CACTCATGAATAATTAATCTAAACATTTTACACAGATGATTTTGATGTCTATTAACCACAGTTTAGGGGCTACAAGTCCT
TCGCTATTTTAACTTGTTTAGACGGTTTTGTAAATGCATATTTTATCATATATATCCGATCGATTTTTCATATAAAAATT
GCGATATTTCCAGTGACTGGTGTTTGAGACATTTTGATACCCTAAACATTGATTTATGTTTAAACTTTACATTTCTTCCA
TGATTATAGAAAGTGGAATTAGGACTTTTAGAGTTATAAAAATAGAACAAGTTTTGTGGAGTAAATTATGGAACTACAAA
ATAAAAAATGATTTCGTATGATTAGGTTCTTCTTATGCGTTATAAATAAAGTTGAAAGATTCCAAAACAACGTTTGCTTT
GCAAGTTGGAAACGAACTAACTTGAGTTGGCAAGTCCATTCCATGACAACCCAAAAATCATATTTAAACATTTTGTATCA
AACAATAAAAGCTTTAGATAAAAAGACGACAAGCAAATAGGGAATATATAGTATAATTATATTACATTAAAAACAAAAGA
TTGACAACCCATCCACTATTAGTCTACATTCTCCACATTTCCACTTATCTTGCTCATCCAAAATCGGTCATTCTCTCTTT
AGTCTTTACCAAGAAGAGCTCCAAGAATCAGAGGTATTTGTTTGTTTGGTCATGCTTATATATTCATAGATTATTCGATT
TCAACTAATATGTTCTGATAGGTACATAAGATATTGGGATCATTATAAAATGGCGAGTGAAGCACCTAGTTGGGCGGATC
AATGGGGGACCGGAGGAATTGGGGTGATGGCTGCGGAGGAGACAACTGACGGCAAAAAAGACGTCACCGGGAAAAAGTCC
GGCAAGACCAAAGCAGGGATTAACAAAGCCAAGATTGTTGTATTTATTGGTGTCAATTGGATGAAGAATCTTGTGCAGAG
GAAGAAGAAGGATTCTACTTCTTCATAGATATAAAACATGCTATTGCTTCTTCTATTTGAAATGTCACAATCTTCTATGC
TATTATTATTCTTAATTCTTTTAAATGGTATCTTGGAGTTCCAATGGTGTGCATCCCACGAATGGATTGAAATTTTTTCA
ATGTTCACAATATAAAAATTGTCTGATGGATCCCGTATAATATCCCTATCCAAAGGAAGCAAAAGAATATAAAGTTGTAT
ACTATATTACTGTTACTTATTGATTTTTCAGTGTTTTTGGGTACTTGTTTCAATTTTGTCTTCATATTATGTTATTAGTA
ATTAGCTATAGCATACATGTTACGAATGAGACATGTATCATGATAAGAAAATTAAAATGCGTAAGGAAAATTACAACCTT
AACAGGATTAGACACATTCTCTTGGTTGACCAAGGAAAAATAAAAACGCTCTTCAGAGGTTTGGTTAGAAGTCTTTAAGG
TTTAGTTGTAAAGGACCATGAACATATATCTAAATTTTTTGGAGCCATATTTTTTCTAAACTAAAAGTAGTTAATACTTC
AGATGATTGAAAGAGTAGTTATATGATAATCTTTTGTGCAAAGTCAATTATTTCTTTAAGCATATCTTTCCAATTGGTTG
CAATATCTATTAAAAATGATAAGAATTCCTAAATATTAAGTTGACCCTACTATTGATATGAAAGCATTGAAAATTAGGAA
AATTCTATTATGTATGCATTTACTTTGTAAGCATTTTTTAAATATGAATACACTTTTCAATAAGTACACAAAACACATTA
TAAACTTTTGAGATGTATATGTTGATTACCCATATACTTTGCTAGCGGCCGAAATGATCACTTTCATGATTTTTTTTTGC
ATAGGTTCATAAAACATATATTTACTTTTTTTTAAGGAAATATTAAATAAATGATAGGAACTTAACAAGAGAAGAAATAA
ATAGGGAGGGAGAATATTTGGAAAGTTGAGCCATATTAATTTCGAAATTCAAATGTATATTGGGAGTGGCACAACCCCAC
CAACATGCCTTGCTCTCTCTTACAAACCTCATAAATACTAAATTGAAAGCTCGTGGGAACCTTGTGTTCCTTTAATTTAT
CGTTATCTAGCAATCTAGCATATACTAGTTTACATATATTGATTTGGTTAGAATAGCTTCTATAATAATATCAGCATAGC
AAACCAGTCTACGTAAAATGCGTATTCTAACGTAAAAACCAGATTATAGTTATTTGGTTAGAACTTATATATATGATGAT
TAGACCATCTTTTACATGGTTTTAGAGAACAAACTAAATTTGTTAGGCCACTGCCACAGCCACAGCCACTGCGACAACAA
AGACAAACTCTTGTTCTTGAAAATTCATTTGAGAGTATACCTGATAATTTGATATCATCGGTTGTAAAAACGAATATGTA
ATGTTACATTACTAATGTATAAAGTATAAACAAATATTATTATCTTTTGAAAAAAGTTTTTCATAGAAACAATTCAAATT
TAATAAACCAACCTCCTTTTTGGTATGGGGTTGTTGGTCTAATTTAATGCTTGTCTCTTGCTTGCCTCTCTTCTTCAACC
ATCTTCGTATTTATATCTTCTTCTTCACTATGCATACTCATAAACTTTGCTACTGGCCGCATTTCTATTTTCTCCTTCGA
TTCTTCTAATTCGTACTTTGGTTTCTGACGTCCCTAAAATTTTTAGACAGTAAGAGTTTCTCCAGGATCCGATGGTTCTC
TCCGGTAAATTAACATTTTAGTGTCAATAGTCATTTATACATATTTTTATTTCACTTTTTGTTTTGTTTATTGGTTTTCT
GGAGCTAAGTGGAGATTATAGTCGAACAAGAGTGGTTTTA