| Basic information from miRBase |
| hairpin accession number: MI0000544 |
| Located between position 12352956 and 12353131 on chromosome 4 strand + |
| mature miRNAs for MI0000544: |
| ath-miR319a (MIMAT0000511): TTGGACTGAAGGGAGCTCCCT |
| You can find this miRNA in ASRP: miR319 (accession: ASRP1665) |
| References |
| [1]Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D, Nature. 425:257-263(2003)., "Control of leaf morphogenesis by microRNAs" |
| [2]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [3]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [4]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [5]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TTTTTGTTGTTGGAAATTTGGAATGGACCATTCCTATATTAATGGGCCTGATCTGTTTAGAGAATAATGGGTTTCATTAG
GCCCATAATTTTATTCGAATTCATCAATCTTCTTGATCTCTCTATTCATTCTTCTGTATTCAATAATTTTTAAGTTTTTC
TCCGGTCTTCTCTGTCTCTCTGTCCATTTTCGTGGCGAAGAAGGTGAATTTCTTCTCTTTGTTTCTCCTAGATTTCTCAA
AAAGATTGTACCTTTTGGATTCTAGATCTTATTTGATCCAATGTTGGATCGAAATTATCCTTCTTTGTTCTAGAATTTGG
TTACTGGGCTGAACAGATCTTGTTTGACTCATGGAACAAATTGTGGATTTTTGATTTGATCTGATTGAAATTTACTGACT
TTACTATGAAACAAAGGGGATCGTATCTTATGCCTGACCCGATCACCGTTTTAGATTCATGTGTTTGTTTAAACAATGTT
GTTGAAGTTGTCATTTTTTGGATTCTGTGGTTTGGTTTCTCACGTTGTTTATGCAAATTCATAGATAAAAATTATATGAA
GATTTGTGTTGTTTTTGACAAACAGATTTTTTAAGGTCTTTTCAAGAAATTATGGAATCTGCAGGGATCCAGCAACTGCT
TGCTGCTGAACGTGAAGCTCAGCAAATTGTCAATGCCGCTAGGACCGGTATTTACAAGTTCTATGCTTATTCTCTGATAC
CTTGAATCTGAGACTCTAGAATTGCTTAAAAGTTTTTCATTTGATTGGTTTACTCATCGTTCAGTGTTCTTATAACTCTT
TCGGTTTCTACGCGTATGTCTTGATTTAATGCCAGAGTTCTTCATGTACTGTGGATGCGTTTATCTGATGATATAGTCTT
AGGATCATGATAAGAGTGATGACATAAAGCCTTTGGTTGAATATAGCATTTGATTGTAACTTTGTACTCATCATGGAAAT
TTAACAGTTGGGCACTAAATGAGTTGCAGAATTACAACTTGTGATTGAGAATCTGTATGTGTTTTGATTTTCAGCAAAAA
TGACTAGACTGAAGCAAGCCAAGGAAGAAGCTGAAACAGAGGTTGCTGAGCACAAAACCAGTACAGAGCAGGGGTTCCAG
AGGAAACTCGAAGCGGTAATGTTGATAAACTGGTTTATAAGCCACTGAAAATGTGGTTCTTTTATTACATCTTGGTTCTT
TCAAACACTTGTTATATTGATGAGAAATCTTGAATGTAAAAACAGACAAGTGGAGATTCAGGTGCAAACGTGAAGAGGCT
TGAGCAAGAGACTGATGCCAAAATCGAGCAATTGAAGAACGAAGCTACGAGAATTTCCAAAGATGTTGTGGATATGCTTC
TGAAAAATGTGACCACAGTGAACAACTGAGTATAATATCTCAAGGAAACCATCAACTGTAAAATGGTGTGATATTTTCAG
TGGATACGTTCATTCCTTTCTTTATATTGTTTTGTGGAATCCAGACTCGTCTGTTGCTATTGATTTTGAAATTGTGTCTT
GAAGCATTGTATTCATTTCTACAGAAAGTCGCTTAGGACTTTTGTGTGTTGTAATAAAATTGAGAACAAAGGAGCCCATT
GGATTTTGTTTCATCAAGAAGATTGGAAATATTCGAACAAGAACCGTCGGTTGTTTTGCAATATCACTTTGTGGCTATTT
TGGAAAAGTTGCTTAAGAAAATATCTTTGTGAACAAAATTAAGCATTATGTTTGTTGGAAATGAGGTAGGACTTCCTGAA
AATGGAAATGGATCCATGATGGGTGATGGGCCATCATCCAAGATGGACTAAATGATGAAGAAATGGAGTGGAGGGTGATG
ATGAAGAACGATAGAGATTTTGATGAACTGTGATGAATGTTGACGGTGTTACAGTTAGAACGTCCAGGATTTGGAGTGCA
AGGATCATATATACCCGGTATGTGAATTTGATCGTTAATCTTGATGGCGTTGCTCAATGGTAAGTTCGGTCTTCGCAGAT
TGTTAGGCTCGTCTACCATCTTCACTCATCAGAGCTAAGGCAGTGCTAGTTGACCGGCCTCTTGACATTATATATGTTCA
CGGCTCTTTGTCATTAGTTGGTCTTTATCAGGTTTTTAATTGAAAATGTTAAGTAAGACTTTTTATTGACTGTTATAACA
ATGGTTTTAATATGCTAACGAGAATGCAACATCAAAAATTATGTAGTTTTTTCTTCTCATATAGAAAACGTAGAAAATGT
AGTTATTGGGCAAAAGAAGAATAAAAGAATATAGACTAGTAGTAAAAGCAAAAAACTAGAGTAATAATAAAGGAATAAAA
GTGTGTAGATGAGAAAAGGGAACTACCCGGTCTAAGCTTCTACGCATTAAATAATTGACAGTTTCCAACATTATCTTAGT
TTGTGTCCAAGTCCACGTTCCAATGAAGTAAAGAAAAATATAAAGGGATTTTTTCTACAAAATTTACCCCAAAAGTTCTA
AATTTGAAGCTTATAAAAACCCATCACTACTTTTGCATACTTGTATCCGCAGTGTATTTCCTCGCATCTACCATCCCTTT
TCTACGCCTCTCTCCCTCTCTCTCTTTCTCCATCAAATCTTGTTTTGTTCAAACTCTCTCTCTCTCATCTATTCTCTCCA
TACAATACATGAATATACATACATACCATCATCTTCTTTTCCCATCTCTAGTTTTTCATCAATCTTCTGATGTTCCAAAC
GCTCTATCTCTTCATATACATACATACGAATATATTATTGTTGTCATAGATCCATTTAGAATCACTTTAGCTTTTAGATG
AGATCTAGGGTTTCTTTGTTTTCTTTCAAATTTTGTTGCATATTCTTCTAAATCATGGTTTTTCGCTTGCTAGGTTATAG
ATCCATGCAAATATGGAGTAGATGTACAAACACACGCTCGGACGCATATTACACATGTTCATACACTTAATACTCGCTGT
TTTGAATTGATGTTTTAGGAATATATATGTAGAGAGAGCT