| Basic information from miRBase |
| hairpin accession number: MI0005399 |
| Located between position 17742098 and 17742302 on chromosome 3 strand + |
| mature miRNAs for MI0005399: |
| ath-miR843 (MIMAT0004265): TTTAGGTCGAGCTTCATTGGA |
| References |
| [1]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [2]Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" |
| [3]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TCTTTCTAAAATTTAATGTAATTTGTTAATTAGCATTCTTACTTTTTTCATGTTGCTACCTAAGATTTCTTATTATAGTA
GTAATTAATTTTGCAGGTTAATGTTCAAAATACAATAAACTAATCATGACTTAGTTAAAAACTTACCTAAATGTTGTTCA
ACTCTCATCTGCAGTTTCCTAGCTCCCTAATACCAATTTTCATAAGCTATTTTAACCTGTTTAATTTCATGTTTTGTTGT
TACATCAAAATATAAGATAAAAATGTGTTTGATCGATTCATCAAATTGAAAGAAAGAGACACAACTTTGACTTTGTGGTT
TTGATGTTTTTCTAAATCATTTAATTTTTTCTGTAACCAGAAGAAACCCAGCTGATTGATCTAGAAGCTCGCTGATATTT
GTGAATCATATGAACTATCCTCACGTGTAGTCCACCGTACGCCACCGTTTTTAAATGAACAGAAGTTTCTCACACGTGTA
GATCCATCACAATTACAAAACCACCCCTACATTCGAGCGTGTGCAAAAGTCAAAAGAAAGGGTACTTTAGTCAGAAGGAA
AGTTCTGTGCGGAGACGAGGAGTTTCCGTTATCCCCTTATTTTATCTCTCTCTCTCTCGTTTTCTCTCACAGACACAACA
AACAAAGCAAAAAAAAATAAAAAATCGCACGTTTCTTCTTCTTCTTCTCTCTCGCAACAAATCTGTATTAGGGTTTTTGA
GAAATCTTCATTTCGTGATTTTGAAATTTATTTGTATTTGATTTTGTTGTTGCTTTGGAATCATCTGCAACCACCATGAT
TTCTGATTCGATCACCAACGCTTCTGCTACTTCAGCTCCAACCGCCAGGGATTTCGGAAAAAAGAAAAGGGTATTGTTTT
CAATCCTTCCTCAAATCTCATTTCTCTCTTCAAAGATTTGATTTCACTCTTTGGGTTTGCAGACGAACAGGTCGGCCAAA
TTGAAACAGAGCAAGCTAGGTCTTCGTCGTGAACAATGGCTTTCTCAAGGTAAAATTAAATGATCTATCTTTACATGTGG
ATTTTGTTTATATTGATTTGGGTTTTTGTTGTTATTAGTTGCGATGATTAACAAAGGGGATAAGGAGGAAATGGAATCCA
ATCGAAGAATTGGGAGTGAAAAGCCTGATCAGAGAGATCTTCCGCGTCCGGTGGAGAATTTAGATGAGGATAACAATGGA
ACACATCGTCATGAGAGCTTTATTGAGTCACTTTCTAATAGCCCTAACAGTATTCTTAGTGGCATGAATTCAATTCCTAA
TTTTAGCAGCAGCAGTAGCAGTGGAAGTGGTGGCTCTTGCTCTGGTAATATAACAGAGGAGGAAGATGCTGATGATGATG
GTTGTTTGGATGATTGGGAAGCTATTGCTGATGCTTTAGCTGCTGATGATGAAAAGCATGAGAAAGAGAATCCTCCTGAG
TCTTGCCAAGAGCATGAGGATATCAAGCAATCAGCTTTAATCGGTGGAGCTGATGTGGTTTTAAGGGATGCAAAGGCGGA
TTCTCAGAGAAGGAAGCAAAAGAGTAACCAGGCGTGGAGGCCAGACGATAAGCTCCGTCCTCAGGGTCTGCCTAATTTGG
AAAAGCAGCGTAGTTTTCCGGTCATGAATTTGCATTTTAGTTCTGTGACTGTGGTGCCATCTTCGTGCCCTATTTGCTAC
GAAGATCTTGACTTAACAGACTCAAATTTCTTGCCATGTCCTTGTGGATTCCGGCTTTGCCTTTTCTGCCACAAGACGAT
ATGCGATGGAGATGGGCGTTGTCCTGGTTGCAGAAAGCCTTATGAAAGGAACACAATCAAGTTTGAAGCTAGTGTTCAAG
GTGGTGGTCTGACTATTCGGCTTGCTCGTTCGTCTAGCATGTTTTGCAGGTCATGAAGAAAGGATGTGTGGCTTTTCTCG
GCCTGTGTCTGTTTGTTTTCTCTCTTCTTCATTGTTTTCCTCGCATGTTCTACGTTTTTCACCTGTCTTTAAAACTCTTT
AGATATGGGTATAGGGATTTGTCTTTTGGCAACTGAGAACTATGTTCTATGTTCTTCTATGTCAATGACTCTTCTTCATC
TGAAACATGTGGTGGTGGTGGTGGTGGTTATGTAGAGTGGTGTGTGAGTACATAAGGTGGTACACGAATTTCAAATACAT
AAAAGTTGCAATAAGTCTCTTTCTCATAGCCTGCGAGAACCTTGCTTATCTGTAATACTCTAAAGGTATCATTTTATGTC
GTCTGTTATTTTAAGGTGGCCATAGATGTTATATCATTCTACTTGATTCTATGTTGAGCGACTAAATACAGCATATAGAC
AGTCAAGTTTGGTTATATATAAAATTGACATTCGCGCGAAAGAGTTGAAGATTACTTCTATTGTCTGATTCTTTTGTGAA
TGATCTACTTCCTCCTTAGCTATATGGTATGCATCCTTGAGTTGATTATACTGATGCAGGATTCTGGTGGAACGCAAATC
TAACAGGAACGTCTTGGTAATGTGATTACTCTTTTATTTACTTGTGTTTAGGAGACATACTTGAGTCAAACTTTCATATC
GAGCTAACTAGCATACAGAGGGGCATAGGGCAAGTTTCAAATTTTGTGTTTTAATCGTTTTCTTCTTTGGTTATGTAGTA
GCTAGAACTTGGAGCGTTTGCACAGCCACTTGTTTTGAGGTATAGAGGTTAGTAATGTTATAAACAATTGAAGTAACCTC
AGGCTCTATTCTGATGACATTCTGGTCCTCTTTCCTTCTGTCAACACTAAGGAAGATTGTTTGTTACTGGTTCATGCTAT
TCGAGATGGCTTTAGGCTTTAGAATAATGTATTTATTCTAAGATCATTGTAAAGTGGAAACCAAATTTGACATTAGAATA
GAGAGCTATTACATTACTTCACAATGATCATACAACATGATTCTTATTCTAAGATCATCGTGAAGTGGAAACCAGATTGA
TAAACATTTCTTATTGCACAAATTAAGAAGCAAGTGTTTC