miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0001085
Located between position 18994632 and 18994856 on chromosome 2 strand +
mature miRNAs for MI0001085:
         ath-miR159c (MIMAT0001015): TTTGGATTGAAGGGAGCTCCT

References
[1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
[2]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"




>promoter (3kb upstream pre-miRNA, by PMRD):
CTCAAGGCCTACTACGATGCGTAATGATGAAGCTAAATTGCCTATAGTGTGAACATTAGGCTTTTATATTCAAAGTTCAA
ACAATGCGGCTATAGCAATGGTACATCGAGGAAATAGAATGAAGTGACAAGGATAATTTAGGAAATGAGGATAGAGGAAT
TGAGTCCTCGTCACATGGGGCCCACATAAATGCGTAAGTAAGACTATCCGCTTACCAGACGGACACGTCATTTTGTCGGG
ACACGTTTGAGCCGTTGGATGATTAATCTCCTTTTCTGACTTATCGACCCCACTTTTTTTTTCCACTACAAAATATTGAT
GGCCACGTCAGATGATTCGAAGTTATATAAAACACACGTTTTTATTGCAGCTTAACCGTCGATTTTTTTCTAATCGAGAA
ACCGAGATCAACGGTCTATATTCAAAGCTGATGTGGTCTGTACCTTTGCTTACGTCACCGAAAACCTAAGTTGAATAATA
CTAGTACTAGTATTATGCTCTCTGATTTCTTTCTACAGTACACAAAATAAAAATAAACAAAAATAGAGAGCCCAGACAAT
ATTTACTACATCACCCAATGGATAACCGACACGTAGATACATCCATGTGAGTCGCATTTTGTAATGTAGGGACCACTTCG
TGGATAGAAGCTCTTTTACGCCAACGCAAAAAAAAAAAGCCTCGTTGGCCCTTTAGCCTCTAAATGCCAATAACTATCTA
CTGGCGTGGCTTAGTTTATACCGTTGGATCATTTGTTTATCCCAGCCGTTGGATTCGAAGCAGTTGTCGGGCTTGTGGGC
CTTTTCTTTATTGTTTTGTTTTCATAATAATGAAAGAAAATAAACTAAAAAAGTATTTTTTATTTTTCCTTTTATGGTGA
TTCCATGATGGCAAAAACGTGGCCATACACGTGGGTCGTCTCGTGGCACCTTTGGAAGATACGAATCGGTAGTGAATAAT
GGACGGTTCGGATCTTTAGTTTTGTCGACAGAAGTGCTCTCCGCGTCGGAGATACTACTAGTCAAAGGTCTTTTCTTCCT
TCGTATTTTACCATAATGTCCCTTCTTTCTAATCAAATTTTTATCATGTATCCAAATTATTCGAAGCAATATTCTATATA
ATAAACAAATATGCCCATCGGTAAGTAGCAAAAGTTAAATTGTGTTTATTTTCATGCCATACAAAAATAATGATTCTGAA
AATTCGTTGGAAAGATTGTTTAGTTTTCTTATTTTTATGTTGCACATGACTTCACTGACGTGTGAATGTGATGACGGATT
TTGAAGAGGATTATACACTATGGTAAATATCGACTATAAAAATAATCTAAACATGAGGGAAGCGTAGAGCGACTAGAAAT
CGAACACGTGTACGGTAGAGATGACATAAGAAATGGCTGGCACTAAACTCGATGAGCCAACTCATCAAACACCACCGTAG
TTTACGCTGTTATATATTCTCATGACACGTGTCTGATGACGTGGTCATCGTCTTGGCGCTCCGTTTTTTTTCTCTCTCTC
TCGCGTCTCCCTTCCCTCAAAAAAAAAAACTGAACTCTTTTTCGCTCTGGTTTTTTTAGAGAGAGAGAAAGATGAAAATG
CGTTTAATTGCTGTTTAGGTTTCGAATTCGCGATTTAAATTTCTGGGTTTCTCTCTGTTTAAGCTTCTTCTTCTTCATCT
TCTGCTTACGTTTCTTCTTCAAGGAGCTTTCGGATTCTTGTAGGTATTGCGTAACTTAAATGGTTCAAATAGAGATTGTT
TGGTCGAATAGTTTTGTGATTTGGTTTCTCTATCATTCATTGATCTTCTAAGTTTTGTGAAAATTTTGCCATTTTTGATC
GTTTGCTTTTGCATTTACTTGAATTGAATGAAAAATTATAAGTTTTGAATTTGAACAAAAACAGCTAAAGCGTAGAGAAG
AACAGAGTTTCTTTTTTTGGGTGCATGTGATTGTTTCAGGGGTAGAATTGTCCAGTAGTGTCTACTTTGTTGATTCCTTT
TGTCTTCCTGAAAGTTTTCTGAACATAGGATGTGAGAGAGAAATACTATTTTACCCTTCTCTGTCTCTATATTTCTCACA
CAACAACACCCATCCCCATGATTTTGCAGAAAGAGTCATTGTTCTCTTGAGTGGGAAACCTTGAAACCATTCCTATGGGA
AATAGCAGCGAGGAACCAAAGCCTCCTACCAAATCAGATAAACCATCTTCACCCCCGGTGGTATGTTGAACAGTTTCAAA
CCATAATTCCAAAGTCAATTTAGTTTTTCTTAAATTCCTTATGCGTTGACTTGACTCTTGTTGATAGGATCAAACAAATG
TTCATGTCTACCCTGATTGGGCAGCTATGCAGGTTAGTCTTTTTTTTATTACGCTCCAGTTATGTACTAGTAATACCATG
ATTAATAATGATTTTCATGATGTGTTGCTGCTAGGCATATTATGGTCCAAGAGTAGCAATGCCTCCTTATTACAATTCAG
CTATGGCTGCATCTGGTCATCCTCCTCCTCCTTACATGTGGAATCCTCAGGTACTAAACACAAACACGAATCATCTTGTG
CTAATATGGTAAAGATTAGGAAGACGTTTCATTGGTGTTTTGTTGGTCTTAAATCCCTTTCAGCATATGATGTCACCATA
TGGAGCACCCTATGCTGCTGTTTATCCTCATGGAGGAGGAGTTTACGCTCATCCCGGTATTCCCATGGTATATAGTAATT
CTGTTCCTCAAACATCTCGTAGTTGAATCCTCCGTGATCGTTTATCTGACTTGGCTTTGAGTTTCTGTGGACAGGGATCA
CTGCCTCAAGGTCAAAAGGATCCACCTTTAACAACTGTAAGTTGTATACCTAGTTTGATACATCAAAGATTGAGAAATGG
TTTTGTTCGCTGTTTAATGGATAGTTCTTCTTTATCGCAGCCGGGGACGCTTTTGAGCATCGACACTCCTACTAAATCTA
CAGGGAACACAGACAATGGATTGATGAAGAAGCTGAAAGA