| Basic information from miRBase |
| hairpin accession number: MI0000218 |
| Located between position 6220646 and 6220841 on chromosome 1 strand + |
| mature miRNAs for MI0000218: |
| ath-miR159b (MIMAT0000207): TTTGGATTGAAGGGAGCTCTT |
| You can find this miRNA in EMBL: (accession: AJ496805) |
| References |
| [1]Mette MF, van der Winden J, Matzke M, Matzke AJ, Plant Physiol. 130:6-9(2002)., "Short RNAs can identify new candidate transposable element families in Arabidopsis" |
| [2]Park W, Li J, Song R, Messing J, Chen X, Curr Biol. 12:1484-1495(2002)., "CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana" |
| [3]Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP, Cell. 110:513-520(2002)., "Prediction of plant microRNA targets" |
| [4]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [5]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [6]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [7]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
ACACCATTGTTTTCATCTGCATATATTAACACCAAAATTTGGTACCATAGAAATAAGAAGGAAACAAAAATACAGTTAAA
GCTAGTTGTCTCTATTACCTGCCGATTCAAGCTGTAATGCGCGGATCTCAGCCTCAAGATCTGCACGGCGTAAAAATGTA
TAGGAAATAAGAATTATCACCTCCAACAAAAAACGTACAGACATTTAGCAAAGAATTCCACAAAATACCCAATCCCTCGC
TAACTGAGAGTTAAATTCACTCGAATTCCAAAGAGAAATAGCTAGGTCAGTTCTACGCAAGCCAATTAAAACCAACCAAT
CAGCTAAACCCTAATCCGATTTCTAATCCAAAAGCCGATAACCCTCCTTCCGATTTAAGATTAACTACCAGAGCAACAAA
TCAATCAGCTTCATAATCGAAGTTAACACAGTAAAACGCAAAAATTCAACAAAAATTGAAGAAAAGATCCGATCGACCAA
CAAAAGTAGTAAGCGCATAATCGAGAAATCGAGAGAGAAAGAAGACACATAGACCAATGACTAGAAAGAGAGAGCTCGAG
AACCCGTACCCATGGCGGATTGAAGAAGCGAACGAAAGGAAAAGGGTTTCTAGGTTATCTCGCGAAAGAAGAAGAAGAAG
CGCGTTAAGGGATCCACCAAACGAACTAGTGCCGCTTCTATGAGGCTCTCATTTTTGCCCAGGTGGATCTTTTATATTCC
CTTTTTTTGCGTAATCAAATTTTTCTTATTTCACATCCCAAAACTCACGTGTCAGGTTTAACGTAAATACGACGTCGGTT
AGCTAATATAAGGCCATAATGAAAGCCCAACTAATGGGCCTTAGTTACCCTTGTGTATGATTGTTGGAAGGCCCATATTC
ACTATTGTGAGCAATATTTATTTTGTACAACAATTGGAAAAGCCTTTGTAAAAAGACACTAGATTTTCAACCGCGGGGAC
TAATTATATTTTAAAGTTAATATATATAAAAGTTTGTAATTTGTAACTATCTATGTAACTTTCTATAAAATATTTTTATT
TTATAGTTTAGAATTGTTATTAAGTAACGTCCTGCCAAACCCGTCCCGCCAACCCGTCCCGTAAAAAAAACTCATTTATT
TTATTAATGTTGATCTTATTTATCATATGTTTATGAATCATTGTCTAAATATTTTGTAATTTTGTAGTAATTAAATGCTA
TCAAATATCTCTGCGGTTTGATGATTATAATTGAATTGTAATAGTCATGCAGAAAAACAATATCAATAATGATAATTTTG
TAGTAATTAAATGATATTAAATATTTTGAAAGTTTTATTTTAGTAACCAATCGTGTAGTTAATGTAGAGAGATTTTAGGA
AAATTGTTAAATGTCAAATATTTAATTCGAAGATTTTTTTCTAATTATCAAAAACAAATATTAATCTAGTGGCAACCATT
GTAAATAAATCCCAACTACAGGATTTATTTCATAAAATGGCTGCAAAAATGTATATATAGATAGATGTGTATAAAAAACA
GAAGAATTTGCTTGTAATTTTTATTTTATTTTTTTAACACACCCTTATAATTTTCAAAAGTTTGTATCTTTTACATAATT
TCTTTCAGTTAAAGAAAGTTAAAAGTTGAATGCAAAAAACACAAAAGCACTAATGAGACTAAGTTCTTTTCTGTAGGAAA
TCTACCCATAGATTCTTTTTGGGGTTATTATCATCTGTTATATCCATCCTTCAATCTTGACCGCACAATGTTATCTTCTT
GTTTTGTATGTTCCCGATAGACCGATACTTTGGAATTTTAATCCAAAAAAGAAATTGAATGTTGCAATCAGATTTAAGAA
TGACAAAAGAAGGAGTGGGGTTACACAAAAGCCAATGAGGAGGCATGTGACGTTTTTATGTAAAAGGGAATCTAATAGCT
AAACAATGTCAGTCCATTTCCCTAAAGTCCTTTTCATTACCACCCCCACCCATTCTATTTTCTTTATTTTGAATTTGGTA
TGATGATATTTTCATCATTTCATTTCATGTACTAATCAAGCTCCATATTCCATATGAATAAATGTTACTTTAATAGCAAA
AATCGTTATCAGACTCGTCTATTCATTAGTTGCGTGTCCACTCTCTTATTATATTCTTATTCAATTGAATTTTTCCAATC
TAAAGTAGGTTAGAAAAAGATTGGCAAGATTTGTTTCATGATTAACAATTTAAATAAATAAATTAATTAAATTAACAGAC
TAAAAAGAGTGAATTAGAAAAATAACTAGAAAAAAGTAAGTTCTTGAGTAGTAATGAAAGTGACAATTGCTAGTAAATAA
GTGGTTTATGAAATCATATATATGAAGTGACAATTGCTGTAAATATGTGATTTAATAGCTTTTCATTAAATATCACAACA
AAAAATCTGTGAAATGAATCAATAGCTATTAAATCACAAAAGTAAAAAAATCTGTGAAATGAATCAATAATCCTAACTAT
TAATGGGTTTAAGAAAAGTCCTCGAAATGAATACCATCTTTGACTCCCTCTTTCTTTCTCATTAGGGCTACAGATTTTTG
TCTTTAAAAAGCCATTCAAGTTTCAATGGTTTTTCACTTTTGTTCTCCTCCTCCCTTTTTTTCTTTTCAGGATTCTTCTT
TTCTATGTTTTATCTTTCATAATAGATCTGATAATTTTGATTTTTCACTATATATATTATGGTTAATACTAGTAGCTTTT
TCATTTCAAGTTTTATCCTTCCATTGGTTCTTTCTGAGTCAAATTGTCTCCTGTTTCGAACCATATATAAGTTTTCAATG
GTTTTGTATTAACTCAAGTATTCAACATTATGTCTCTCTTTTTCTTGCTTGGATCTCTAATGCTGTTCATATTTTAAAGC
ATAGGTTTAGGTTAGATGCATGTAACTGCCAATTAAAAGAAGGTCAAGAGTTTTTTGATTGTATGAATATATGAGTTAGT
CAAAGCAGATCCACACGATTATATAGAAAAACAAAGGAAG