| Basic information from miRBase |
| hairpin accession number: MI0005102 |
| Located between position 4182132 and 4182299 on chromosome 1 strand - |
| mature miRNAs for MI0005102: |
| ath-miR472 (MIMAT0003931): TTTTTCCTACTCCGCCCATACC |
| References |
| [1]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [2]Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" |
| [3]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
>promoter (3kb upstream pre-miRNA, by PMRD):
GCTCGATGCAGTCAAATACAGTATCATCATTGATGGTCTTTGCAAACACGGGAGCCTCGACAATGCATTCAACCTTTTCA
ATGAAATGGAAATGAAAGGGATCACAACAAATATTATTACCTACAACATTCTCATTGGCGGCTTTTGTAATGCTGGTAGA
TGGGATGATGGTGCCAAGTTATTGAGGGATATGATCAAGAGGAAAATCAACCCCAACGTTGTCACATTCAGTGTTTTGAT
TGATAGTTTTGTGAAAGAGGGAAAGCTTCGAGAGGCCGAAGAACTGCACAAGGAGATGATACATCGAGGCATAGCTCCTG
ATACTATCACATACACTTCTTTGATAGATGGGTTTTGCAAGGAGAACCACCTAGATAAGGCCAACCAGATGGTGGATCTG
ATGGTTAGCAAAGGATGCGATCCTAATATCAGGACGTTTAATATCCTCATAAATGGATATTGTAAGGCTAATCGAATTGA
CGATGGTTTGGAACTCTTCCGCAAAATGTCTTTGAGAGGAGTGGTTGCAGATACAGTTACTTATAACACTCTTATCCAAG
GATTTTGTGAATTGGGAAAACTTAATGTTGCCAAAGAACTCTTCCAAGAGATGGTTTCTCGTAAAGTTCCTCCTAATATT
GTGACCTACAAAATTTTGCTGGATGGGTTGTGTGACAATGGGGAATCAGAAAAAGCGTTGGAAATATTTGAAAAAATAGA
GAAGAGTAAGATGGAGCTTGATATTGGTATCTATAACATCATCATTCACGGGATGTGCAATGCTAGTAAGGTGGATGATG
CTTGGGATTTATTCTGTAGCCTCCCCCTCAAAGGAGTGAAGCCCGGTGTCAAAACATACAATATAATGATTGGGGGACTG
TGTAAGAAAGGCCCATTGTCTGAAGCGGAACTGTTGTTTAGAAAAATGGAAGAGGATGGGCATGCGCCAGATGGTTGGAC
ATACAACATACTCATCAGGGCACATCTTGGAGATGGTGATGCAACCAAATCAGTTAAACTTATTGAAGAACTGAAGAGGT
GCGGGTTCTCAGTTGATGCTTCCACTATAAAGATGGTTATCGATATGTTATCGGATGGTAGATTGAAGAAAAGCTTTTTG
GATATGCTTTCTTAGAATGTTTGATCTTAATCAACCAGAGATAAAGCTAACTATTTCTCTAAGTATCACAACTGTAGCAA
ATCTACTAGCTTTTGGAACCAACCTGAAAAACCTTCAGACTCTTGGAACTGGAAGTGTCTCTTAAGGTTGCGTTGTTTAG
CAGAAAACTTTGTCAGGTGTAAGATTGGAGATGGAAAGACTGCTAGTTTCTGGTTTGATAACTGGACTCCTTTTGGTCCC
CTAATCAAGTTCATTGGAACAGATGGCCCCTGTAGTTGAGAGCCCCTTTGAATGCTAAGGTAGCTGATTTATATAACTCA
GTTGGTTGGACTCTAGCGGCTCCTAGAACTGGTTTGGCGTGTGACCTTCTTATCTACCTCTCTACTATAGCGTTGCCTAC
TGACTCTGACGAGTTGGATGCGTATGATTGGGTGGTGGAGGACAAGTTATGCAATGGGTTCTCCTCAGCTAAGACGTGGG
AATTCTCAGACCAAGGTCGGATGTGGTTAGCTGGGCAAGCACAGTGTGGTTTAAAGGTGCAATTCCCAAACATGTCGCTT
CATATGTGGGCAACAAATCTTGATCGCCTTCCCACTAAAGCTAGGCTTGCTTCTTGGACATTGAGGACAGAGACCACTTG
TTTTTGACTTGCGAATATGCGTGTTATATCTGGTATACTGTTAGTGTGAGATTGGAGCTCCCTCCCATCAACTTTGTTGT
GTGGAACGACCTCATGGCATGGACTCTTCAAAAGAACAAGCGTTCACCGCCAACAACTCTACGTAAGCTCATTGCTCAAT
CTGTTATCTATGCCATTTGGAAACAGAGAAATAATTTGCATCACAATCATGAGTATATTCTTCCATCGGTGATATTCAAG
ACCATTGACAGAGAGATTAAAAATTCCATTACTGCAAGAAGACTGAAGAAGCGTTTCAGGCGGCTTATGACTCTTTGGTT
GCACTAAAATGGGCTCAACCCAGACTGATCTATATTGCTTGCTTGTTTTAAAACTTTTTGCCAAATCAATTTTCAAGGTT
CAAACCCATGTAAATCTATCTTTTCATTTATATGATATTTGCAGTTTAGCAAAAAAAAACTATTTCTCGACTAGTGTATG
ATGTATTTGGTCCTATTATTCGAATCTTTGTTCGCATCTAACCTGTTGACGTAGTCTGTGTTGAGGAGCCCCCATGAACC
CAATATACATATTGTTCTGTTTTTCTATCTCTTCTAGTAGTTTTCTTAAATGCCTGAATATTTGTTGTTATTGCTAGACC
GCAAACGCAAAGTGCAATTTTATTTGGAGTGAGAGAATATGCCAAAATGTGCTATATGGGCTATATTCTTTTGTGAAGAA
GAAATGGGCTATCTGTTGAAATGGGTTCTCTGACAGGCCCTTTTTCTTTATGGGCCCAAAGAGATGGCGGCACCGCGTGG
AAGATCATGTCTGAGCTGAGCTCGACAAACGGACAACGGACCATTACATAGATTCTTCTCGCAGAGGTTCTTCCGTTTTT
TTTTTTTTTCTCATTTGGCTATTCAATAGCTTAATTTTTGATTAAAGTTAACCTTCTTTTGGATCGATTGTGTGTGTTGT
CGAAACTTGATAGGGTTTAGTGAAGAAAAGACTGAAACTTTAATCAAATTTGTTATTTTTTGTTCTAATGATTCAAGATC
TGGTTCTCTATTCTAATGATTTACTTAACTCAAATTAGCTTATGCTGTGTTGTTAGTCTGTGAATCTCTTTATCTCTATT
AGTGCAGTGATGCGTGTTTGTTTCTCTGTCTCAGTATCATTTGAGCATCAAGTTTTGTCAATGATTATGCGCCAAAGGGG
AGTCATATTCTCATCAAAGATGGATTCGGGATTACGCCTC